extrahepatic bile duct neoplasm#MONDO:0021385	ADJUSTED_RANKS	PSG19	MUC6	LIAT1	CDX2	KRT20	EBAG9	MUC5AC	RNF43	KRT7	KRT17	SMAD4	MUC4	FGFR2	GPBAR1	HNF1B	CHGA	CEACAM5	SYP	SLC29A1	SALL4	ARID1A	KRT19	GNAS	S100A4	GPC3	IDH1	KRAS	MUC1	MSLN	PDPN	FSCN1	DHX9	RASSF1	GGT1	NCAM1	MSH2	MLH1	ENO2	MSH6	PMS2	AFP	TMEM11	PPY	HMGA2	ANO1	NKX2-1	MMP7	CDKN2A	GAST	CD24	MME	KRT5	CD163	TP53	SST	CDH1	EPCAM	NRAS	GPT	BRAF	KIT	VEGFC	GPT2	CDH2	CDKN1B	CD274	CCND1	MET	NF1	MGMT	ARG1	FGFR1	CTNNB1	SLC2A1	SNAI1	ERBB2	IFNA2	IDH2	PCNA	EGFR	PIK3CA	BRCA2	IGF2	ATM	MDM2	BIRC5	CD68	MKI67	PDCD1	VIP	NOTCH1	NTRK1	H3-3B	CD34	PTEN	H3C13	H3-5	H3-7	H3-4	TRP53
carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018918	ADJUSTED_RANKS	EBAG9	FGFR2	MUC6	IDH1	ARID1A	CLDN4	GNAS	KRT20	GPC3	MUC5AC	CDX2	SMAD4	KRAS	KRT7	CHGA	SYP	PDPN	CEACAM5	TGFBR2	ROS1	LIAT1	IDH2	FGFR3	IL33	BRAF	TMEM11	NCAM1	NOTCH1	ERBB2	CD274	NTRK1	EIF2AK3	KRT19	ENO2	NRAS	CDKN2A	SHH	PCNA	TP53	AFP	EGFR	GAST	VIP	KDR	GPT	PIK3CA	CDH1	CTLA4	ALK	CTNNB1	CCND1	PTGS2	AKT1	MYC	MTOR	GCG	CRP	ALB	TGFB1	CD8A	TNF	INS
ampullary signet ring cell adenocarcinoma#MONDO:0002669	ADJUSTED_RANKS	MUC5AC	CDX2	KRT17	KRT20	LIAT1	MUC6	KRT7	ERBB3	KRT18	MSH6	KRT19	CEACAM5	CDH1	PIK3C3	SRC	PIK3CB	PIK3CD	PIK3CG	PIK3CA	GPT	TP53	ERBB2	CRP
extrahepatic bile duct cystadenoma#MONDO:0004462	ADJUSTED_RANKS	NRCAM	TFF2	MUC6	KRT20	KRT7	CDX2	CEACAM5	EPCAM	KRT19	GPT2	AFP	NCAM1	GPT	KRAS	KLK3	ALB
ampulla of vater mucinous adenocarcinoma#MONDO:0002736	ADJUSTED_RANKS	UTP25	ST6GALNAC1	CDX2	MUC6	MTAP	SFN	KRT20	MUC5AC	MUC16	LIAT1	KRT17	KRT7	RDX	MSH6	MSN	TSG101	GFM1	EZR	SMAD4	CANX	PTGER4	CD9	PMS2	MLH1	EEF1A2	MSH2	REL	EPCAM	KRT19	CD86	CDKN2A	KRAS	PXDNL	PXDN	KLK3	EGFR	TP53	ALB
extrahepatic bile duct adenoma#MONDO:0003445	ADJUSTED_RANKS	WRNIP1	RFXANK	MUC6	AFAP1	LIAT1	KRT20	CLDN18	CDX2	MUC5AC	NRCAM	PCNT	DSG2	TFF2	KRT7	MUC1	PDPN	CDH3	IFNA17	ALCAM	HMGA2	EFNB2	SHKBP1	MSLN	S100A9	HNF1B	MSH6	SORD	FSCN1	APC	S100A4	AQP3	DSG1	CISH	AQP1	MSH2	MLH1	ANO1	CD24	TWIST1	HNF1A	KRT14	CLDN7	EPCAM	KRT19	GNAS	PMS2	CEACAM5	GPT2	CHGA	KRAS	SMAD4	IFNA2	PROM1	CTNNB1	NRAS	CDH2	CDH17	TP53	MME	NCAM1	GPT	SLC2A1	NTRK1	AFP	GOLPH3	SST	IGF2	THY1	DNTT	CDH1	TIMP1	SYP	SPP1	ATP4A	ATP12A	CD44	PCNA	CCND1	KIT	TRP53	CDKN2A	BRAF	PTGS2	F2	ERBB2	BAX	F3	ALB	MYC	KLK3	CRP	FN1	GCG	EGFR	BCL2	INS
bile duct papillary neoplasm#MONDO:0003455	ADJUSTED_RANKS	ZFP354A	MUC6	MUC5AC	RNF43	CLDN18	LIAT1	CDX2	KRT20	GNAS	EBAG9	KMT2C	KRT7	MUC4	TFF1	MUC1	CEACAM5	SMAD4	KRT19	EPHA3	ARID1A	EZH2	KRAS	GPC3	S100A9	STK11	FGFR2	MMP7	BANF1	TSG101	REEP5	MMP14	TGFBR2	AFP	SYP	CTNNB1	PDPN	CHGA	CDH2	MSH6	CDKN2A	ERBB3	TP53	MLH1	IDH1	CCNA1	GPT	ARG1	PROM1	PPY	CCND1	MDM2	H2AX	CD163	GPT2	ENO2	MSH2	CDH1	NCAM1	DNMT1	LGALS3	KITLG	CD2	KIT	MME	SLC2A1	TRP53	BRAF	PRKACB	IGF2	PGR	BRCA2	CD274	SST	PIK3CA	PXDNL	PXDN	CD44	BRCA1	EGFR	CRP	ERBB2	MYC	PTGS2	CCK	ATP4A	ATP12A	F2	F3	ALB	ESR1	AKT1	INS	CD8A	IL6	TNF
extrahepatic bile duct papillary adenoma#MONDO:0004250	ADJUSTED_RANKS	WRNIP1	MUC6	AFAP1	LIAT1	KRT20	CLDN18	NRCAM	CDX2	PCNT	DSG2	MUC5AC	TFF2	MUC1	KRT7	PDPN	CDH3	IFNA17	ALCAM	HMGA2	EFNB2	SHKBP1	MSLN	S100A9	HNF1B	MSH6	SORD	FSCN1	APC	S100A4	AQP3	DSG1	CISH	AQP1	MSH2	MLH1	CD24	TWIST1	HNF1A	KRT14	CLDN7	EPCAM	KRT19	PMS2	CEACAM5	GPT2	CHGA	IFNA2	PROM1	KRAS	CTNNB1	NRAS	CDH17	MME	SLC2A1	NTRK1	TP53	GPT	GOLPH3	IGF2	THY1	DNTT	TIMP1	SYP	AFP	NCAM1	SST	SPP1	CD44	PCNA	CCND1	TRP53	CDH1	BRAF	PTGS2	F2	ERBB2	BAX	ATP4A	ATP12A	F3	MYC	KLK3	CRP	FN1	EGFR	ALB	BCL2	INS
extrahepatic bile duct small cell adenocarcinoma#MONDO:0003708	ADJUSTED_RANKS	VANGL1	AGR2	BAP1	NRCAM	FOXC2	SMIM20	FABP5	LTB	H1F0	MUC6	LTBR	TSPAN3	ESRRA	SYP	CDX2	RELB	CD24A	CHGA	SKP2	SNAI2	MUC5AC	RHOB	SMAD4	PSMB8	KRT7	STMN1	KRT20	CCNE1	PPY	NCAM1	CDH2	CD24	PTGER4	SNAI1	PDCD1	ENO2	LIAT1	FGFR2	SUCO	H1-0	NKX2-1	EZH2	LEPR	ARG1	IDH1	GAST	CD163	CDKN1B	EPCAM	CD274	KRT19	NES	KRAS	WT1	CEACAM5	H3C13	H3-5	H3-7	H3-4	H3C12	H3-3B	TERT	VIP	MT1E	RHOA	CDKN2A	MKI67	CDH1	FOXP3	SST	MPO	TP53	CD44	CCND1	KIT	PRL	TRP53	PPARG	ANXA5	GPT	MTOR	CD34	ACTB	LEP	GAPDH	GCG	IGF1	CRP	F2	CD8A	ALB	ERBB2	INS
pediatric hepatocellular carcinoma#MONDO:0018055	ADJUSTED_RANKS	TMCO6	MIX23	TMEM134	WDR83OS	FBXL18	SPNS3	ACTBL2	C9ORF78	FAH	HSD17B13	SELENOI	ATP8B1	GPC3	PNPLA3	AFP	ABCB11	DNAJB1	HNF1A	ABCB4	GLUL	OPTN	G6PC1	CTNNB1	SERPINA1	TERT	MET	EPCAM	KRT19	HGF	NR1H4	HNF4A	IDO1	GPT	KRT7	CCND1	NFE2L2	HAMP	GPT2	CD274	IFNA1	F2	ELANE	STAT3	IGF2	MTOR	CASP9	F8	PDCD1	ANXA5	PPARA	SRC	GAPDH	PTEN	CTLA4	HIF1A	AKT1	TRP53	CEACAM5	PECAM1	CDH1	ACTB	CD44	BRAF	EGF	MYC	TP53	IGF1	MMP9	CASP3	CCK	ALB	PIK3CG	BAX	KRAS	KIT	PIK3CB	PIK3CD	CD8A	BCL2	INS1	PIK3CA	INS2	LEP	IL10	TGFB1	F3	INS	IL6	PXDNL	PXDN	CD34	CXCL8	CD4	IL2	IFNG	TNF	CRP	IL1B
bile duct carcinoma in situ#MONDO:0000374	ADJUSTED_RANKS	VSTM2B	CLDN18	MUC6	ESRRB	LIAT1	PBRM1	FGFR2	KRT20	MUC4	MUC5AC	GPC3	KRT7	MSLN	CDX2	GNAS	SMAD4	KRT19	SERPINB5	MUC1	LGR5	FSCN1	INSM1	IDH1	KRAS	ARG1	CEACAM5	ROS1	ARG2	IL33	EZH2	CDKN2A	DNTT	MDM2	MCL1	HGF	AFP	TP53	CDKN1B	IDH2	NTRK1	MET	EPCAM	PCNA	ERBB2	CD274	PDPN	CCND1	FASLG	SYP	TERT	CD86	CD44	PRKACB	EGFR	MKI67	CTNNB1	ESR2	MYC	PTGS2	FOXP3	MME	CDH1	BRAF	BAX	GPT2	PTEN	ALK	ANXA5	PECAM1	PTPRC	JUN	GPT	PIK3CA	CD8A	ALB	BCL2	CASP3	TGFB1	AKT1	CRP	IL6	PXDNL	PXDN	ESR1	IFNG	INS
intrahepatic bile duct adenosquamous carcinoma#MONDO:0100132	ADJUSTED_RANKS	GCNT1	TP63	KRT19	LIAT1	KRT7	SMARCB1	KRT5	KRT20	KRT8	MUC5AC	EEF1A2	AFP	SYP	ENO2	CEACAM5	NCAM1	PCNA	MB	CDH1	PTGS2	CTNNB1	CCK	ERBB2	TP53	CRP
malignant tumor of extrahepatic bile duct#MONDO:0021321	ADJUSTED_RANKS	PSG19	MUC6	LIAT1	CDX2	KRT20	EBAG9	MUC5AC	KRT7	KRT17	SMAD4	FGFR2	GPBAR1	HNF1B	MUC4	CHGA	CEACAM5	SYP	SLC29A1	SALL4	ARID1A	KRT19	S100A4	GNAS	IDH1	KRAS	MUC1	GPC3	MSLN	PDPN	FSCN1	DHX9	NCAM1	RASSF1	GGT1	MSH2	ENO2	MLH1	AFP	MSH6	PMS2	PPY	HMGA2	TMEM11	ANO1	NKX2-1	CDKN2A	GAST	CD24	MME	CD163	TP53	SST	KIT	CDH1	GPT	NRAS	CDH2	MMP7	BRAF	ERBB3	GPT2	KRT5	VEGFC	EPCAM	CDKN1B	CCND1	CD274	MET	NF1	MGMT	ARG1	FGFR1	CTNNB1	SLC2A1	ERBB2	SNAI1	IFNA2	EGFR	IDH2	PCNA	BRCA2	PIK3CA	IGF2	ATM	MDM2	BIRC5	CD68	MKI67	PTEN	PDCD1	VIP	NOTCH1	NTRK1	H3-3B	CD34	H3C13	H3-5	H3-7	H3-4	TRP53
liver adenomatosis#MONDO:0035447	ADJUSTED_RANKS	APC2	RPS4X	HNF1A	FABP1	MED12	APC	G6PC3	G6PC2	GPC3	GLUL	GOT2	G6PC1	HNF1B	AXIN1	ARID1A	MUTYH	CTNNB1	IGF2R	SHH	SSTR2	DNAJB1	ANO1	ALPG	AURKA	SLC2A2	RB1	EZH2	ALPL	ALPI	KRT7	ODC1	UCHL1	ALPP	KRT5	CDKN1B	KRT20	AFP	KRT19	HAMP	SELL	CHGA	TERT	CYP19A1	CD5	GLP1R	GSK3B	SYP	GAST	ITGAM	PRKACA	MME	NCAM1	AR	B2M	GPX6	GPX8	GPX7	GPX5	GPX2	GPX3	CD34	KIT	PTPRC	PRL	GCG	BRAF	EGF	CEACAM5	TP53	KRAS	JUN	MYC	MTOR	GPT	GAPDH	CRP	F2	CD8A	ERBB2	INS	CD4	ALB	IL6
extrahepatic bile duct clear cell adenocarcinoma#MONDO:0004081	ADJUSTED_RANKS	NRCAM	SALL4	GPC3	PAX8	LIAT1	NCAM1	ARG1	PPY	KRT20	SYP	ENO2	AFP	CHGA	KRT7	GAST	KIT	CEACAM5	SST	TP53
ampulla of vater adenosquamous carcinoma#MONDO:0003553	ADJUSTED_RANKS	KRT5	MUC5AC	KRT7	SYP	CEACAM5	GPT2	CCK	GPT
bile duct adenoma#MONDO:0006108	ADJUSTED_RANKS	PPHLN1	A4GNT	MAD1L1	MUC6	SCGB2A1	DSC1	SYMPK	ATP1B1	FGF14	SPTBN2	PKP1	LIAT1	TLCD3B	PBRM1	MUC5AC	KRT20	RNF43	KRT7	SEC63	TFF2	PRKCSH	CDX2	SFN	KRT36	CLDN18	GOLM1	KRT19	STIP1	VTCN1	NRCAM	SORD	PKP2	PCNT	DSG2	HNF1B	MTAP	ARID1A	HOXA10	SPTB	DSC2	PDPN	EZH2	CDH3	DSG1	AHR	SERPINH1	AGRN	SCGB1A1	DNAJB1	CYP1A1	IFNA17	ALCAM	HMGA2	EFNB2	CYP1A2	EPCAM	MSLN	S100A9	TP63	DSP	MUC1	NCAM1	MSH6	KRT10	GLUL	FSCN1	APC	GNAS	AFP	CEACAM5	PSMA7	S100A4	AQP3	CISH	SMAD4	FGFR2	GPC3	ACTA1	AQP1	CLDN5	OLIG2	MME	MSH2	CALM5	XRCC6	CALM4	CYP2B6	POSTN	CYP27B1	IDH1	MLH1	ANO1	BANF1	TP53	CYP1B1	CTNNB1	CD24	IGF2	KRAS	GPT2
mucinous intrahepatic cholangiocarcinoma#MONDO:0004078	ADJUSTED_RANKS	ZFP354A	MUC12	MUC6	MUC5AC	MUC13	MUC16	MUC4	EMCN	LIAT1	KRT20	KRT19	CLDN18	CDX2	SATB2	KRT7	MUC1	KRT17	TFF1	ARID1A	EPHA3	GPC3	GNAS	ABCC3	FABP1	FGFR2	LGR5	SMAD4	CEACAM5	MUC5B	MMP7	AQP1	KRT8	CDH2	EPCAM	STK11	EZH2	CLDN7	AFP	PROM1	ERBB3	PMS2	KRAS	NCAM1	IDH1	MSH2	CCNL2	FUT4	ARG1	MSH6	WT1	MDK	TERT	MLH1	MME	CTNNB1	TGFA	PKM	DNMT1	CDH1	BRAF	HGF	F7	TP53	PTGS2	CCND1	CHGA	KIT	TRP53	CDKN2A	EGFR	ERBB2	PIK3C3	PIK3CA	MMP9	PTEN	CD274	DNAH8	PXDNL	PXDN	F2	STAT3	EGF	GPT	AKT1	PIK3CB	PIK3CD	PIK3CG	F3	KLK3	CD34	ACTB	IFNG	ALB	IL6	TGFB1	CRP	CD8A	TNF
ampulla of vater squamous cell carcinoma#MONDO:0003490	ADJUSTED_RANKS	MUC6	LIAT1	KRT20	KRT7	SYP	MUC5AC	NKX2-1	CDX2	ENO2	KRT5	KRT19	NCAM1	CHGA	CEACAM5	MME	CCK	GPT
extrahepatic bile duct squamous cell carcinoma#MONDO:0006203	ADJUSTED_RANKS	SPEF1	SPA17	MAGI2	SERPINB3	GPC1	FAT1	MUC6	FBXW7	SORD	RASSF1	KRT5	LIAT1	S100A4	KRT20	CREBBP	SYP	KRT7	MET	CTCF	ENO2	MUC5AC	NCAM1	CDX2	TMEM11	CHGA	CEACAM5	KRT19	NOTCH1	CDH2	MME	GPT	CSF3	CDKN2A	CDH1	AFP	KRAS	CCK	CD34	CRP	ALB
liver neuroendocrine carcinoma#MONDO:0015072	ADJUSTED_RANKS	OR4K5	ASB13	ASB12	ADGRG4	ASB5	ASB8	PPWD1	ASB6	CHGA	SYP	NCAM1	GPC3	DAXX	SSTR2	LIAT1	ENO2	KRT20	SSTR5	SSTR3	KRT7	NKX2-1	NKX3-1	SALL4	SST	KRT19	CDX2	SSTR1	CCKBR	ASCL1	CEACAM5	KRT8	VIP	RET	AFP	INSM1	ATRX	PIP	PAX8	GAST	PPY	DLL3	ARG1	B3GAT1	KRT5	CD99	GATA3	PTHLH	EPCAM	UCHL1	ANO1	MAPK8IP1	SERPINA3	EWSR1	GRP	GLUL	WT1	PMS2	CD274	MME	KIT	RB1	SCT	CTLA4	SMAD4	MSH6	GPT2	PTPRC	MKI67	GCG	PDCD1	MGMT	POMC	IGF2	KRAS	CTNNB1	SERPINA1	TG	MTOR	MSH2	BRAF	MET	AR	ALK	SDC1	NOTCH1	NF1	MLH1	GPT	TP53	PTH	CD34	PDPN	KLK3	NTRK1	CDKN2A	ERBB2	FOLH1	PGR	ATP4A	ATP12A
extrahepatic biliary papillomatosis#MONDO:0004353	ADJUSTED_RANKS	LIAT1	EEF1A2	KRT20	KRT7	CEACAM5	KRAS	AFP	TP53	GPT	ALB
adenosquamous bile duct carcinoma#MONDO:0003549	ADJUSTED_RANKS	GCNT1	DAXX	LIAT1	KRT5	KRT7	TYMP	KRT19	TP63	RASSF1	S100A4	MUC5AC	KRT20	CDX2	SMARCB1	ATRX	KRT8	TYMS	NKX2-1	EEF1A2	TMEM11	SYP	GPT2	CEACAM5	AFP	NCAM1	CHGA	PDCD1	JAK2	ENO2	PTGS2	PCNA	MB	CDH1	TP53	GPT	CD274	KRAS	CTNNB1	CCK	CRP	ERBB2
extrahepatic bile duct mucinous adenocarcinoma#MONDO:0002739	ADJUSTED_RANKS	UTP25	MUC6	KRT20	NRCAM	CDX2	MUC5AC	LIAT1	MTAP	SFN	KRT7	KRT17	RDX	MSN	GNAS	TSG101	GFM1	GPC3	EZR	KRT19	MSH6	CANX	PTGER4	CD9	SMAD4	MSH2	EPCAM	MLH1	CEACAM5	CDKN2A	KRAS	MME	NCAM1	PCNA	AFP	TP53	KLK3	EGFR	PXDNL	PXDN	INS
ampulla of vater cancer#MONDO:0000919	ADJUSTED_RANKS	PSG19	CDX2	LIAT1	KRT20	MUC6	KRT17	KRT7	MUC5AC	PIK3R2	HNF1B	CELA3B	GLIS2	SLC29A1	MUC4	CELA1	CHGA	SYP	SMAD4	PDPK1	TFF2	ABCG8	MUC1	IFNA17	MSH6	CEACAM5	PDPN	LGALS9	SALL4	TNFRSF14	MSLN	GPC1	PMS2	MSH2	MLH1	S100A4	GGTLC3	ANO1	GPC3	KRAS	RDX	KRT19	PALB2	ARID1A	PTGER4	EPCAM	NCAM1	MSN	FSCN1	CCKAR	SST	APC	GGT1	NF1	CD79A	ENO2	GAST	MME	BGN	MLN	EZR	DHX9	PPY	HMGA2	GNAS	FGFR2	ALDH18A1	HLA-G	KRT5	NKX2-1	ALPG	KIT	CDH1	KRT8	GATA3	CDKN2A	ALPP	MMP7	BRCA2	CYP27A1	NRAS	SPARC	CDKN1B	IDH1	IFNA2	G6PC1	TP53	BRAF	VIP	ALPL	ARG1	ALPI	CTNNB1	AFP	CCND1	GPT2	MDM2	GPT	CD274	ATM	SOX2
carcinoma of liver and intrahepatic biliary tract#MONDO:0018531	ADJUSTED_RANKS	HAUS5	ANKFN1	GPC3	PBRM1	KRT19	SALL4	KRT7	MUC6	LIAT1	AGR2	KRT20	AFP	KRT17	FGFR2	ARID1A	MUC5AC	CDX2	EPCAM	LRP5	CEACAM5	ARG1	ABCC3	CLDN4	DLK1	IDH1	NOTCH2	ABCB11	COMMD3-BMI1	KRT8	BMI1	SMAD4	ABCB4	AGRN	EZH2	PROM1	ABCC2	GNAS	OPTN	SOX9	ARG2	NCAM1	TERT	MMP7	IDH2	MDK	CDH2	KRAS	NR1H4	MME	GPT2	PTHLH	FOXO1	GPT	KIT	F2	SYP	BECN1	PDCD1	CTNNB1	CHGA	CD274	PDPN	SLC2A1	PTEN	TP53	CD44	CDKN2A	CDH1	FOLH1	MDM2	SERPINA1	CD34	PCNA	BRAF	CCND1	CTLA4	TTR	ENO2	ALB	MTOR	CD68	TRP53	KDR	ERBB2	EGFR	CSF3	PIK3CA	MMP2	PECAM1	PTGS2	BRCA1	MYC	CCK	AKT1	TGFB1	SST	MMP9	IL6	PXDNL	CD8A
common bile duct neoplasm#MONDO:0006709	ADJUSTED_RANKS	CDRT15L2	CDRT15	DCAF4L2	PSG19	RASGEF1A	PTCD1	UGT2B11	MUC6	LIAT1	CDX2	KRT20	MUC5AC	KRT7	KRT17	FGFR2	GPC3	SMAD4	SALL4	MUC4	SLC29A1	CEACAM5	HNF1B	CHGA	SYP	KRT19	IDH1	MUC1	GNAS	KRAS	PDPN	ARID1A	FSCN1	NCAM1	AFP	MSH6	PPY	DHX9	IDH2	KRT8	ANO1	PMS2	MSH2	ENO2	ABCB11	FGFR1	EPCAM	MLH1	GAST	ARG1	MMP7	TP53	GPT	SST	CDH2	GPT2	NKX2-1	CDKN2A	KIT	CCND1	MME	KRT5	CTNNB1	MDM2	CDH1	BRAF	CD274	NRAS	PROM1	CDKN1B	SNAI1	PDCD1	TERT	BIRC5	NF1	AHR	NOTCH1	CYP1A2	CYP1A1	PCNA	CD68	PTEN	ERBB2	SLC2A1	VIP	BRCA2	CD34	EGFR	TRP53	PTGS2	GSK3B	CTLA4	F2	PIK3CA	PECAM1	BCL2	MYC	CRP	ALB	PARP1	PTPRC
extrahepatic bile duct carcinoma#MONDO:0003090	ADJUSTED_RANKS	PSG19	MUC6	LIAT1	CDX2	KRT20	EBAG9	MUC5AC	KRT7	KRT17	FGFR2	SMAD4	MUC4	CHGA	GPBAR1	SYP	CEACAM5	SLC29A1	SALL4	ARID1A	S100A4	GPC3	GNAS	HNF1B	KRT19	MUC1	IDH1	MSLN	KRAS	PDPN	RASSF1	GGT1	DHX9	AFP	NCAM1	ENO2	HMGA2	PMS2	TMEM11	MLH1	MSH2	MSH6	KRT5	NKX2-1	PPY	CDKN2A	MMP7	TP53	GAST	ARG1	CD163	BRAF	VEGFC	EPCAM	NRAS	CDH2	CDKN1B	CDH1	GPT	SST	MME	CD274	MET	CCND1	GPT2	ERBB2	CTNNB1	IFNA2	SLC2A1	IDH2	MKI67	EGFR	PCNA	NF1	IGF2	SNAI1	MDM2	PIK3CA	VIP	NOTCH1	KIT	PTEN	BRCA2	H3C13	BIRC5	H3-5	H3-7	H3-4	TRP53	H3C12	NTRK1	H3-3B	F2	PDCD1	ATM	CD34	CRP	PTGS2	ALB	BRCA1	CD44
adenocarcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018536	ADJUSTED_RANKS	SPEF1	PGAP1	ANXA10	SPA17	EBAG9	CDC23	AGPS	ONECUT1	SPDL1	CCL25	FGFR2	MUC6	AGR2	BAP1	CCL1	ERH	ARID1A	IL4RA	IDH1	FABP5	DKKL1	PCNT	CCL26	DMBT1	PSCA	GNAS	C6ORF15	ID4	PLOD1	ESRRA	SALL4	NR1H2	SLC7A5	EREG	CDH3	GPC3	PFKFB3	MUC5AC	CDX2	KRT20	NAPSA	CLDN4	AREG	SLC2A3	IL4R	KRAS	TGFBR2	PLXNA2	KRT7	RPS6	CCL21	IDH2	FGFR3	ID1	RAF1	LGALS1	FLNA	DHX9	CXCL13	SYP	SMAD4	CD24	CHGA	NTRK1	EIF2AK3	BRAF	CD274	TSC2	MMP14	KRT19	STK11	ERBB2	NOTCH1	ROS1	LIAT1	CEACAM5	NRAS	NKX2-1	LPA	IL33	SHH	NCAM1	ANXA8	PDPN	ARG1	FGFR1	ENO2	MCL1	EGFR	PDGFRB	PDCD1	CD163	REM1	HNF4A	KDR	AFP	MET	SDC1	WT1	OCLN
signet ring cell intrahepatic cholangiocarcinoma#MONDO:0004346	ADJUSTED_RANKS	TAF1L	ADGRB3	PIK3C2B	STIL	TAF1	EPHA3	SYNE1	KRT17	KRT7	KRT20	LIAT1	GPC3	CDX2	KRT19	ERBB3	TGFBR2	MUC5AC	FUT4	CEACAM5	AFP	MME	FN1	GPT	TP53
squamous cell carcinoma of liver and intrahepatic biliary tract#MONDO:0018534	ADJUSTED_RANKS	BAZ1A	GCNT1	USP1	ARID1B	KMT2C	TOPBP1	PDLIM7	PER3	POLE	GPC3	KRT20	KRT7	MUC5AC	EEF1A2	NPM1	KRT19	CDH2	SYP	ENO2	CEACAM5	NCAM1	CDH1
liver mesenchymal hamartoma#MONDO:0018308	ADJUSTED_RANKS	PHLDA2	NPAS4	NAB2	SNRPN	CDKN1C	PEG10	AFP	PEG3	GPC3	ZPR1	KRT20	KRT8	KRT17	MEST	LIAT1	MUC6	KRT18	KRT7	KRT19	NOTCH2	CDX2	SMARCB1	SLCO1B1	DICER1	SMARCA4	SLC2A1	HNF1A	PECAM1	CD7	SERPINA1	STAT6	GNAS	CD99	MUC5AC	MYOG	CD34	CEACAM5	GPT2	CALB2	SOX9	RPS6KB1	MET	ENO2	NCAM1	TERT	MDM2	CTNNB1	SYP	GPT	MME	CD68	F2	CD44	MB	CCND1	KIT	PTPRC	TP53	PXDNL	PXDN	ATP4A	ATP12A	F3	MTOR	BCL2	POMC	ALB
intrahepatic biliary papillomatosis#MONDO:0004509	ADJUSTED_RANKS	MUC6	KHK	MUC5AC	CDX2	LIAT1	KRT20	KRT7	KRT19	GNAS	EEF1A2	CEACAM5	SMAD4	SLC2A1	AFP	KRAS	CTNNB1	TP53	CDKN2A	EGFR	ERBB2	GPT	ALB
intrahepatic bile duct adenoma#MONDO:0003444	ADJUSTED_RANKS	PPHLN1	MAD1L1	RFXANK	MUC6	FGF14	PBRM1	SEC63	PRKCSH	SFN	KRT36	CLDN18	STIP1	NRCAM	KRT7	KRT19	PCNT	DSG2	MUC5AC	TFF2	MTAP	LIAT1	ARID1A	HOXA10	EZH2	SERPINH1	KRT20	HNF1B	TP63	NCAM1	KRT10	SORD	GLUL	AQP3	DSG1	FGFR2	AQP1	CLDN5	XRCC6	CDX2	AGRN	DNAJB1	IDH1	AFP	BANF1	CEACAM5	MME	SMAD4	IDH2	TUBB3	CD7	CLDN7	EPCAM	CDKN2A	GNAS	PRKDC	NKX2-1	HSPB3	TERT	TP53	BRAF	KRT5	MAP2K1	IGF2	IRS1	CTNNB1	PROM1	SERPINA1	NRAS	CDH2	CDH17	SHH	ELANE	AHR	KRAS	SLC2A1	NTRK1	GPT	FOLH1	MDM2	INSR	AMY1C	TRP53	MKI67	SYP	ENO2	GAST	CD44	CCND1	CD34	HSPA4	KIT	CDH1	BCL2	EGFR	PXDNL	ALB	PXDN	ERBB2	TGFB1	CRP
intrahepatic bile duct cystadenoma#MONDO:0003979	ADJUSTED_RANKS	PMPCA	NRCAM	MUC6	MUC5AC	CEACAM5	KRT20	KRT7	LIAT1	CDX2	FUT4	AFP	KRT19	ENO2	NCAM1	GPT	CD44	ESR1	CRP	ALB
squamous cell carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018537	ADJUSTED_RANKS	SPEF1	SPA17	KRT5	KRT20	PDPN	NCAM1	CEACAM5
ampulla of vater small cell neuroendocrine carcinoma#MONDO:0004117	ADJUSTED_RANKS	BAP1	DAXX	ALCAM	MSLN	SMARCA2	ARID1A	SYP	CDX2	CCNE1	SSTR2	SMARCB1	CHGA	ATRX	SMARCA4	KRT8	PTGER4	PMS2	LIAT1	ARG1	MSH6	KRT7	ENO2	ALPP	SMAD4	KRT20	MSH2	EPCAM	PROM1	LGALS3	GAST	MLH1	SOX2	NCAM1	IDH1	CEACAM5	AFP	MME	SST	KRAS	CD44	CDH1	CD274	GCG	TP53	F2	ERBB2	GPT	ALB	INS
carcinoma in situ of extrahepatic bile duct#MONDO:0021299	ADJUSTED_RANKS	UTP25	CLDN18	MUC6	LIAT1	IL4RA	ATF2	MSLN	KRT20	PLOD1	EREG	MUC5AC	EFNB2	SLC29A1	MUC4	SMAD4	MUC1	KRT7	AREG	LGR5	FSCN1	IL4R	GNAS	TSG101	GFM1	TP53BP1	ADAM10	S100A4	RPS6	CISH	GPC3	CDX2	PIK3R1	ERBB4	CANX	TSC2	CD9	ERBB3	TGFBR2	ARG2	TMEM11	EZH2	ARG1	CEACAM5	KRAS	TCHP	CD163	CALB2	THBD	EPCAM	NOTCH1	NRAS	PDPN	TP53	GLB1	DNTT	TIMP1	SYP	MYC	ENO2	AFP	BAX	SPP1	CTNNB1	CSF3	CCND1	PIK3CA	ERBB2	PTPRC	CDKN2A	BRAF	EGFR	PTGS2	CD274	PXDNL	PXDN	PIK3CB	PIK3CD	PIK3CG	JUN	AKT1	TGFB1	FN1	GAPDH	IL4	ALB	BCL2	ESR1	CRP	CD8A	INS
distal biliary tract carcinoma#MONDO:0003707	ADJUSTED_RANKS	FGFR4	FGFR2	MUC6	CDX2	SMAD4	LIAT1	CEACAM5	KRT7	IDH1	KRT19	KRT20	CHGA	NOTCH3	FGFR3	ERCC1	FGFR1	PTGER4	SYP	PMS2	MUC5AC	NKX2-1	IDH2	FUT4	NCAM1	MSH2	MET	PDCD1	ENO2	MLH1	KRAS	DICER1	PDPN	CD274	NF1	MDM2	TP53	BRAF	GAST	SST	ERBB2	PIK3CA	PTEN	GPT	AFP	CCND1	CDKN2A	CDH1	CRP	EGFR	JUN	F2	MTOR	ALB	PXDNL	BCL2	PXDN	IL10	ACE	CD8A	CD4	IL6
extrahepatic bile duct adenocarcinoma#MONDO:0002665	ADJUSTED_RANKS	PSG19	MUC6	LIAT1	CDX2	KRT20	MUC5AC	KRT17	KRT7	FGFR2	SMAD4	GPBAR1	ARID1A	MUC4	CHGA	SLC29A1	SYP	HNF1B	GPC3	CEACAM5	MUC1	KRT19	S100A4	IDH1	MSLN	GNAS	DHX9	KRAS	RASSF1	PDPN	HMGA2	AFP	NCAM1	MSH6	MSH2	ENO2	PMS2	MLH1	NKX2-1	VEGFC	NRAS	CDH2	BRAF	CD163	EPCAM	ARG1	GAST	CDKN1B	CDH1	CDKN2A	PPY	TP53	MME	SST	KRT5	GPT	CD274	IDH2	ERBB2	SNAI1	EGFR	SLC2A1	BRCA2	GPT2	NF1	MDM2	MKI67	H3C13	BIRC5	H3-5	H3-7	H3-4	CTNNB1	H3C12	CCND1	NTRK1	H3-3B	IGF2	KIT	TRP53	PTEN	PIK3CA	PDCD1	PCNA	ATM	F2	CRP	CD34	KDR	BRCA1	ALB	MMP2	MYC	PIK3CB	MTOR	PIK3CD	PIK3CG	CCK	PXDNL	BCL2	PXDN
bile duct cystadenoma#MONDO:0003420	ADJUSTED_RANKS	PMPCA	MUC6	NRCAM	TFF2	FOXL2	KRT20	CEACAM5	MUC5AC	CDX2	KRT7	KRT19	AFP	CES1	LIAT1	FUT4	SMAD4	GPT2	MET	EPCAM	HGF	PGR	GPT	ENO2	NCAM1	KRAS	CD44	ESR1	SST	JUN	F3	KLK3	F2	CRP	ALB	TP53	INS
solitary necrotic nodule of the liver#MONDO:0015049	ADJUSTED_RANKS	GPC3	EZR	AFP	HNF1A	KRT8	KRT19	LIAT1	KRT18	TRIM21	CD68	KRT20	WT1	CEACAM5	VIM	HAMP	CD34	KRT7	PECAM1	SYP	ENO2	NCAM1	GPT2	GPT	CTNNB1	CD8A	POMC	CD4	IL6
mixed fibrolamellar hepatocellular carcinoma#MONDO:0000891	ADJUSTED_RANKS	PRKAR2A	DNER	BAP1	PCSK1	RASSF1	DNAJB1	ARG1	NTS	KRT19	KRT7	TERT	AFP	CTNNB1	PXDNL	PXDN	ERBB2	TP53	ALB
extrahepatic bile duct adenosquamous carcinoma#MONDO:0006202	ADJUSTED_RANKS	DAXX	RASSF1	S100A4	KRT7	ATRX	KRT5	LIAT1	CDX2	TMEM11	SYP	KRT20	NCAM1	GPT2	CHGA	CEACAM5	ENO2	AFP	KRAS	CCK	GPT	TP53	CRP
cholangiolocellular carcinoma#MONDO:0004315	ADJUSTED_RANKS	CHST4	NACC1	CHST2	ARID2	ITGB6	HS6ST1	MARVELD2	KRT19	PBRM1	EMCN	SALL4	KRT9	ARID1A	EPCAM	KRT7	FABP5	NIPBL	KHK	TFF1	MUC1	ESRRA	KRT1	CUL3	ABCC3	NCAM1	CLDN4	F11R	IDH1	FOXA2	EZH2	FGB	AICDA	AFP	PROM1	FGFR2	GPC3	KIT	IFNL3	SMAD4	HNF1A	IDH2	KRT20	KRT8	LIF	CLDN7	TERT	CEACAM5	PMS2	LIAT1	CDH2	ARG1	MSH6	MSH2	F2	NES	OCLN	MLH1	KITLG	CDKN2A	ABCG2	MME	PDPN	KRAS	MDM2	RUNX2	ABCB1	SYP	PTEN	TP53	CD44	MAPK3	BRAF	PPARG	GPT	CTNNB1	MYC	FN1	CD34	EGFR	PXDNL	ALB	PXDN	ERBB2	CRP	IL6	TNF
extrahepatic bile duct signet ring cell carcinoma#MONDO:0002664	ADJUSTED_RANKS	LIAT1	KRT20	KRT17	MUC5AC	CDX2	KRT7	GPC3	MSH6	MET	KRT19	CEACAM5	CDH1	AFP	GPT	TP53	CRP
ampulla of vater neoplasm#MONDO:0000921	ADJUSTED_RANKS	PSG19	CDX2	LIAT1	KRT20	MUC6	KRT17	KRT7	PIK3R2	MUC5AC	HNF1B	GLIS2	SLC29A1	MUC4	CHGA	CELA3B	SYP	SMAD4	PDPK1	CELA1	TFF2	ABCG8	MUC1	IFNA17	MSH6	LGALS9	SALL4	TNFRSF14	PDPN	MSLN	PMS2	CEACAM5	MSH2	MLH1	S100A4	GGTLC3	RDX	KRAS	PALB2	ARID1A	NCAM1	MSN	ANO1	FSCN1	APC	GGT1	CD79A	SST	GPC3	KRT19	ENO2	NF1	BGN	PTGER4	GAST	EPCAM	EZR	DHX9	PPY	HMGA2	GNAS	MME	HLA-G	KRT5	ALPG	KRT8	KIT	ALPP	MMP7	CDH1	CDKN2A	CYP27A1	NRAS	SPARC	CDKN1B	IFNA2	G6PC1	NKX2-1	BRCA2	VIP	TP53	ALPL	ALPI	CTNNB1	CCND1	GPT2	CD274	SOX2	BRAF	HNF4A	SLC2A1	GPT	IDH1	ESR2	SNAI1	ATM	MDM2	CD86	ERBB2	PLAU	CD5
papillary extrahepatic bile duct adenocarcinoma#MONDO:0004039	ADJUSTED_RANKS	SPEF1	MT1M	SPA17	MUC6	UTP25	MT1G	MUC5AC	EBAG9	RNF43	CLDN18	VGLL1	KRT20	ERH	MUC1	LIAT1	CDX2	SMIM20	GNAS	MTAP	MUC4	BDKRB1	CXCL16	SFN	ARID1A	SMAD4	KRT7	SALL4	KRT17	RDX	NOTCH2	MSN	GGT1	TSG101	GFM1	GPC3	REEP5	ATP7B	EZR	KRT19	DHX9	ABCC2	ANO1	KRAS	PIK3R1	ABCB11	ERCC1	SYP	JAG1	PDPN	ERBB4	CANX	PTGER4	ABCB4	MMP7	MMP14	CD9	ERBB3	TGFBR2	MLH1	CP	CEACAM5	EZH2	CHGA	ARG1	MSH6	CD163	NCAM1	CDKN1B	IGF2	TP53	CDKN2A	MSH2	DNMT1	ENO2	MME	H3C13	H3-5	H3-7	H3-4	H3C12	H3-3B	GPT	CD86	AFP	CCND1	MT1E	SST	CTNNB1	PXDNL	PXDN	GPT2	COX1	MMP2	KIT	TRP53	CDH1	BRAF	F2	CD274	ERBB2
hilar cholangiocarcinoma#MONDO:0003345	ADJUSTED_RANKS	ZNF420	MBD2	SLC38A1	HDGFL1	GPR17	MUC6	AGR2	KRT9	RAB2A	PBRM1	PCCA	KRT20	MUC5AC	LIAT1	KRT7	CEACAM5	FHDC1	SLC10A1	SLC10A2	ZEB1	HDGF	DHX9	RALA	RCC1	ABCB11	MMP7	KRT19	CDX2	GGTLC3	SLC29A1	FGFR2	GPC3	TMEM11	VEGFC	IDH1	GPT2	RASSF1	IL16	OPTN	GGT1	CYP27A1	CD79A	SMAD4	GPT	CACNA1A	AFP	TMEM37	ERCC1	KRAS	XPR1	NR1H4	KRT8	SNAI1	MMP14	PDPN	GNAS	TEK	CHGA	F2	CDH2	KRT18	IDH2	PDCD1	NCAM1	BCL6	NRAS	CDH1	LCN2	CCND1	SYP	IL15	MMP2	MME	MDM2	NOTCH1	TP53	BRAF	SERPINC1	ALB	FASLG	TTR	CD274	BRCA2	CRP	MMP9	BCHE	JUN	CTLA4	CXCR4	PRTN3	DNTT	MKI67	CD34	ATP4A	ATP12A	SST	PCNA	MTOR	ENO2	CTNNB1
bile duct cyst#MONDO:0018805	ADJUSTED_RANKS	TBC1D3B	TBC1D3C	TBC1D3G	TBC1D3	PKHD1	NPHP3	PRKCSH	MUC6	INVS	ONECUT1	SEC63	REG1A	MUC5AC	PKD2	PKD1	GPBAR1	PRSS1	CEACAM5	NOTCH2	CDX2	LIAT1	KRT7	KRT20	HNF1B	KRT19	MUC4	SPINK1	CES1	AFP	SCT	GPT2	GPT	SMAD4	GNAS	ABCB11	JAG1	KRAS	ABCB4	MMP7	IL33	MYOG	NCAM1	TLR7	NR1H4	CHGA	CFTR	F2	F3	AHR	CYP1A2	CYP1A1	CYP2B6	NOTCH1	SHH	DICER1	SST	CRP	TP53	TTR	HDAC9	F8	MME	CDH1	TLR2	SYP	ENO2	CCND1	PTGS2	ATP4A	ATP12A	CDKN2A	ALB	ALK	CD34	CTNNB1	PCNA	TGFB1	MMP2	KIT	PLG	TRP53	JUN	STAT3	PLAT	CKMT1B	CKMT2	CKB	CKM	EGF	PGR	MYH14	MTOR	ESR1	CXCL8	EGFR	AKT1	BCL2	CD8A	IL6	IFNG
combined hepatocellular carcinoma and cholangiocarcinoma#MONDO:0044791	ADJUSTED_RANKS	HAUS5	DTHD1	CRISPLD1	ANKFN1	ARID2	GPC3	PBRM1	KRT19	PCLO	HCCS	ARID1A	KRT7	AFP	EPCAM	GOLM1	AGR2	SLCO1B3	LRP5	ARG1	SALL4	FGFR2	LIAT1	KHK	PROM1	PLOD1	KRT20	CEACAM5	CLDN4	DLK1	YAP1	IDH1	MUC6	TNFRSF4	DNAJB1	MUC1	TERT	KRT8	NCAM1	SLC10A1	IDH2	EZH2	COMMD3-BMI1	BMI1	KRT18	NES	KIT	BGN	SOX9	MME	MET	ARG2	OPTN	FLT4	CDK6	ACR	ITK	ABCB11	HNF1A	PDCD1	ABCB4	GLUL	CTNNB1	MMP7	CD274	KRAS	MUC5AC	F2	FGFR1	PTHLH	GPT	MDK	FOLH1	MKI67	NANOG	GPT2	FOXO1	NRAS	PDGFRB	CD163	CTLA4	CD34	SMAD4	PDPN	THY1	PTEN	DNMT1	TP53	SYP	BECN1	NOTCH1	BRAF	MTOR	VIM	CDH2	VEGFA	HGF	ABCG2	AHR	CYP1A2	CYP1A1
sarcomatous intrahepatic cholangiocarcinoma#MONDO:0004451	ADJUSTED_RANKS	PRG3	ARID2	PBRM1	KRT19	KRT7	KRT1	GPC3	SMARCB1	S100A9	TP63	KRT8	ARID1A	LIAT1	KRT20	ARG1	CEACAM5	SOX10	AFP	STAT6	VIM	KRT5	CDH2	KIT	CD68	FASLG	TERT	MB	CD34	BCL2L1	SERPINA1	SYP	MME	NCAM1	GPT2	CTRB2	CTRB1	CSF3	COX1	GPT	CDH1	STAT3	F2	CD274	BAX	KRAS	CYCS	CTNNB1	TP53	F3	BCL2	ALB
bile duct mucinous cystic neoplasm with an associated invasive carcinoma#MONDO:0002868	ADJUSTED_RANKS	RNF43	MUC6	SFN	TKFC	MUC5AC	RDX	MSN	FSCN1	LIAT1	CDX2	EZR	KRT20	GNAS	EZH2	MSH6	KRT7	SMAD4	MSH2	MLH1	KRAS	CDKN2A	PGR	CTNNB1	TP53	PIK3CA	GPT
periampullary adenocarcinoma#MONDO:0004465	ADJUSTED_RANKS	RFC1	HHLA2	COLEC12	MFRP	PIK3R2	MAPRE1	LRP1B	CDX2	KRT17	AFAP1	RBM3	PDPK1	LIAT1	NPTX2	BUB3	KRT20	ADAM9	IFT172	TFPI2	SATB1	HNRNPU	REG1A	SERPINB6	COL11A1	ADAM12	KRT7	SLC29A1	MUC6	HNF1B	MTAP	MUC4	SFN	PGRMC1	PODXL	PALB2	DHX9	CELA3B	SATB2	PHYH	BAG1	GPC1	BUB1B	CELA1	MUC5AC	DCK	CHGA	SHPK	NF1	CEACAM5	NAPSA	ADRA1D	DYNC1I2	MSLN	RDX	SMAD4	MUC1	MLH1	TXNIP	PTGER4	MSH2	CCND2	NOTCH2	MSN	FSCN1	KRT19	GYPC	LYVE1	SYP	ELAVL1	S100A4	RPS6	SPARC	FXN	G6PC1	CXCL15	CCNE1	EZR	MSH6	HMGA2	SST	PIGR	ANO1	KRAS	LAP3	PAX8	HNF4A	CDKN1B	CDKN3	ERBB4	CDKN2A	EPAS1	GDF15	CD7	CXCL11	PKM	ERBB3	GPT2	PMS2	CDH17	KRT18
perihilar intrahepatic cholangiocarcinoma#MONDO:0044788	ADJUSTED_RANKS	PCCA	FGFR2	PBRM1	ARID1A	MUC6	DHH	IDH1	GGTLC3	FGF19	DHX9	MUC5AC	GGT1	S100A4	SMAD4	OPTN	IDH2	CEACAM5	MUC1	FGFR1	IL16	CCL21	KRT20	NR1H4	MMP7	EZR	KRT19	MSH6	KRT7	HMGA2	PMS2	LIAT1	ATRX	FGFR3	KRAS	TMEM11	KLRK1	EZH2	CDH2	MSH2	MMP14	STK11	CAGE1	GNAS	CYP27A1	AGTR2	CACNA1A	CDX2	PDCD1	EPCAM	CD274	FUT4	PROM1	MLH1	GPT2	NCAM1	IL15	AFP	CHGA	GPT	CDH1	BRAF	PKM	ERBB2	NRAS	LCN2	CTLA4	EGFR	PDPN	F2	SERPINC1	SYP	CDKN2A	MDM2	TP53	KDR	MTOR	CRP	BRCA2	EGF	CCND1	CTNNB1	TRP53	HIF1A	PRKACB	ALB	CD68	MYC	PIK3CA	PXDNL	PECAM1	PXDN	BRCA1	MAPK3	JUN	PTGS2	SST	CCK	IL6	AKT1	ACTB
carcinoma of the ampulla of vater#MONDO:0017590	ADJUSTED_RANKS	PSG19	LIAT1	CDX2	KRT20	KRT17	MUC6	KRT7	MUC5AC	PIK3R2	GLIS2	SLC29A1	TFF2	CELA3B	HNF1B	MUC4	PDPK1	CHGA	SYP	SMAD4	CELA1	TFF1	MUC1	IFNA17	SALL4	MSLN	GPC1	MSH6	CEACAM5	SHC2	PMS2	MSH2	PDPN	S100A4	GGTLC3	GPC3	KRAS	MLH1	ARID1A	PTGER4	EPCAM	FSCN1	KRT19	GGT1	BGN	NCAM1	ENO2	KRT5	HMGA2	SST	ANO1	ALDH18A1	NKX2-1	MME	ALPG	NF1	PAX8	KRT8	GATA3	ALPP	MMP7	CDH1	ERBB3	GNAS	GAST	NRAS	SPARC	CDKN1B	IFNA2	G6PC1	KIT	ALPL	TP53	ARG1	ALPI	PPY	BRCA2	CDKN2A	CTNNB1	SOX2	BRAF	HNF4A	GPT2	SLC2A1	GPT	ERBB2	AFP	ATM	MDM2	CD86	PLAU	VIP	CCND1	IGF2	CDH17	TRP53	MKI67	CD274	BIRC5	CDKN1A	SPP1
ampulla of vater adenocarcinoma#MONDO:0002670	ADJUSTED_RANKS	PSG19	CDX2	LIAT1	KRT20	KRT17	MUC6	PIK3R2	KRT7	MUC5AC	HNF1B	SLC29A1	PDPK1	CHGA	TFF2	MUC4	SYP	MUC1	SMAD4	SALL4	MSLN	GPC1	MSH6	MSH2	ANO1	CEACAM5	GPC3	PMS2	PTGER4	PDPN	MLH1	FSCN1	S100A4	KRAS	NCAM1	KRT5	EPCAM	DHX9	HMGA2	ENO2	SST	CD79A	KRT19	NF1	KRT8	GNAS	MME	SPARC	G6PC1	NKX2-1	GAST	KIT	ARG1	BRCA2	NRAS	SOX2	CDKN2A	HNF4A	CDKN1B	NTRK1	CDH1	BRAF	MET	TP53	MDM2	GPT	CD86	GPT2	PLAU	CTNNB1	ERBB2	IGF2	CDH17	AFP	TRP53	CD274	BIRC5	EGFR	SLC2A1	ATM	IDH1	CD80	F8	VIP	CCND1	CD34	SPP1	PTEN	DNTT	PIK3CA	TIMP1	MMP2	BRCA1	PARP1	CCK	PTGS2	PCNA	PXDNL	PECAM1	BCL2	PXDN
extrahepatic bile duct neoplasm#MONDO:0021385	Co-expression	SLC44A3	MAL2	DAB2IP	PLXNB1	ARHGEF16	DDR1	YAP1	SOWAHB	DSP	EPB41L4B	PTPRF	MMP15	EPCAM	CTNND1	SDC1	SOX9	KIAA1217	VWA1	KIAA1522	MLLT4	LRIG3	WASL	CBLC	MYO5B	KIF12	SHROOM3	CEP170B	SH3D19	SYT7	ERRFI1	RNF128	MYO1B	EPHA2	PCDH1	CLDN3	PLEKHA6	GRB7	FGFR3	SH3BP4	CGN	BCAR1	PTPN21	S100A14	SNX7	CLDN1	AMOTL2	LGR4	NPNT	LRP5	TNFRSF21	GNA11	DOCK1	FAM84A	FLRT3	TOX3	CPE	DDAH1	SEMA3F	PTPRK	APP	CAMSAP3	LAMA5	TSPAN6	TNKS1BP1	TEAD3	SLCO2A1	GNG12	CTGF	EPB41L1	RTKN	LAD1	TEAD1	RARRES2	RND3	TSPAN12	EFNB2	MAGI1	S100A16	ST5	MXRA5	KRT19	ASS1	ADCY6	ANO1	FAT1	CXADR	RBFOX2	NAV2	TMEM125	SHROOM2	ADGRL2	MAOA	ERBB2	NYNRIN	CADPS2	IL22RA1	EFNA1	PERP	RIPK4	C8orf4
carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018918	Co-expression	MAL2	SLC44A3	PLXNB1	DDR1	ARHGEF16	SOWAHB	DAB2IP	MYO5B	MLLT4	MMP15	EPCAM	CLDN3	CGN	CBLC	CAMSAP3	VWA1	TOX3	PCDH1	KIF12	EPB41L4B	KRT19	PTPRF	CTNND1	SYT7	KIAA1522	MYH14	RAB25	SOX9	DSP	NPNT	CEP170B	PLEKHA6	KIAA1217	SHROOM3	WASL	TMEM125	LAD1	GRB7	S100A14	FAM84A	SDC1	RNF128	YAP1	PRR15L	LRIG3	CXADR	PLEKHA7	LRP5	SHC2	LAMA5	HSD11B2	ERBB3	ESRP1	SEMA4G	CDS1	PRSS8	EFNA1	NEO1	ACE2	ANO1	SH3D19	C2orf72	ERBB2	SLCO2A1	ENTPD8	GPRIN2	CAPN5	SHROOM2	FLRT3	WFDC2	CPE	ERRFI1	IRF6	TSPAN12	RTKN	EPHA2	EFNB2	TNKS1BP1	GOLT1A	FGFR3	TSPAN1	GNA11	MAOA	TMPRSS2	HID1	MYO6	PTPN21	SEMA3F	C1orf226	CD24	RIPK4	MAGI1	KIAA1671	CMTM4	TNFRSF21	TEAD3	LGR4	MYO1B	BCAR1	TSPAN8
ampullary signet ring cell adenocarcinoma#MONDO:0002669	Co-expression	ELF3	CBLC	B3GNT3	S100A14	PRR15L	AGR2	KRT8	LAD1	GRB7	CLDN4	PRSS8	SCNN1A	EPCAM	ESRP2	TSPAN1	MISP	RAB25	CLDN3	ESRP1	TMPRSS2	PKP3	MST1R	EHF	PRSS22	CLDN7	RBBP8NL	ARHGEF16	GRHL2	OVOL2	C1orf210	AP1M2	CDH1	IRF6	CGN	MAL2	BAIAP2L1	C1orf116	MYO5B	SOWAHB	FAM83B	TMEM184A	GPX2	CRB3	SFN	FOXA1	FXYD3	OVOL1	MUC2	BICDL2	FUT3	DSP	ITGB6	IL22RA1	RIPK4	AGR3	PLEKHG6	C1orf106	CHMP4C	TRIM31	TMEM125	ATP2C2	EVPL	GJB3	C6orf132	PRR15	SLC44A4	LAMC2	KRT19	ITGB4	FAM83H	TJP3	TFF1	EPS8L2	UGT1A6	KLF5	ENTPD8	C9orf152	CDC42BPG	EPN3	TRIM29	EPS8L3	POF1B	STAP2	ATP8B1	CEACAM7	MUC5B	RAB17	CEACAM6	TMC4	MARVELD3	DSG2	C19orf33	MUC13	SERPINB5	CAPN8	FAM83E	TACSTD2	MYH14	ARHGEF5	LAMA3
extrahepatic bile duct cystadenoma#MONDO:0004462	Co-expression	CLDN3	MAL2	SOWAHB	ARHGEF16	EPB41L4B	CGN	KIF12	KRT8	SLC44A3	ERBB3	PRR15L	EPS8L3	TMPRSS2	MYO5B	MYH14	CBLC	CLDN4	GOLT1A	GRB7	ENTPD8	TSPAN8	AGR2	FOXA1	ELF3	CAMSAP3	EPCAM	TSPAN1	TOX3	HNF4G	RNF128	HMGCS2	RAB17	PRSS8	LAD1	SHROOM3	C2orf72	PLEKHA6	GJB1	S100A14	RHPN2	PRR15	OVOL2	TMEM125	PTPRF	C1orf210	TFF1	HSD11B2	SYT7	USH1C	MISP	C11orf52	SOX9	CDH1	DSP	FABP1	VWA1	ESRP1	MUC3A	ERBB2	NPNT	MUC13	WWC1	RBBP8NL	KIAA1522	MMP15	CXADR	DDC	IL22RA1	CDS1	KIAA1217	FOXA2	SLC44A4	MOGAT2	COBL	KRT18	TOM1L1	ACE2	FOXA3	PKP3	B3GNT3	GPRC5C	SDC1	ESRP2	IHH	FGFR3	NGEF	RAB25	ATP1B1	DSG2	ARFGEF3	KRT19	TM4SF5	ASS1	LRRC31	CLDN2	CKMT1B	HNF4A	TMEM54	FUT3	CKMT1A
ampulla of vater mucinous adenocarcinoma#MONDO:0002736	Co-expression	KRT8	DSG2	PKP3	GRB7	BAIAP2L1	MISP	KRT18	S100A14	FAM83B	MYO5B	ESRP1	CLDN4	FERMT1	TSPAN1	ARHGEF16	DSP	LAMC2	MAL2	LAMA3	AGR2	KLF5	MST1R	PERP	PLS1	SDC1	ELF3	RIPK4	LAD1	OVOL2	RHPN2	EHF	ESRP2	FOXA1	CDH1	CGN	CBLC	LRRC1	ADGRG6	B3GNT3	FLNB	KRT19	EPCAM	GJB3	SCNN1A	SHROOM3	TRIM29	CLDN1	NET1	LRIG3	GRHL2	SERPINB5	ITGB6	PAWR	AC112229.1	RAB25	CLDN7	CD2AP	SH2D4A	AP1M2	FGFBP1	PRR15	CTNND1	TOM1L1	CHMP4C	KIAA1217	FAM160A1	EPHA2	MET	YAP1	GFPT1	PRKCI	PRSS8	CLDN3	EPB41L4B	GPRC5A	SLC44A3	FZD6	PRR15L	RHOD	ALDH1A3	ITGA2	GPR39	RHOV	KIAA1522	EPN3	C6orf132	ERBB2	TWF1	YES1	HN1L	MYO1B	ECT2	SH3D19	MYO5C	IRF6	PTPRF	SFN	WWC1	GRHL3	PRSS22
extrahepatic bile duct adenoma#MONDO:0003445	Co-expression	MAL2	ARHGEF16	SHROOM3	SLC44A3	DSP	SDC1	PTPRF	GRB7	KRT8	MYO5B	YAP1	CGN	EPB41L4B	KRT19	LRIG3	CTNND1	CBLC	EPCAM	S100A14	KIAA1522	SOWAHB	KIAA1217	EPHA2	DAB2IP	TSPAN6	ERBB2	PLXNB1	EGFR	CLDN3	FAT1	SOX9	DSG2	SH3D19	CLDN4	ESRP1	MYO1B	KRT18	TEAD3	DDR1	TOM1L1	MMP15	WWC1	GPR39	RIPK4	LGR4	TEAD1	PRR15	PKP3	LAD1	BCAR1	CLDN1	CXADR	AMOTL2	FAM83B	FERMT1	PTPN21	KIF12	MLLT4	LAMA5	VWA1	LAMC2	PERP	SEMA3F	MISP	RHPN2	TJP1	PRSS8	GNG12	ERBB3	MAGI1	RND3	PTPRK	ERRFI1	S100A16	TSPAN1	BAIAP2L1	FGFR3	ASS1	SH3BP4	MID1	NPNT	SNX7	CEP170B	GPRIN2	OVOL2	DDAH1	RAB25	PLEKHA6	FLRT3	LRP5	C1orf106	TSPAN12	NCKAP1	ADCY6	ELF3	CAMSAP3	TMEM125	RNF128	WASL	CARD10
bile duct papillary neoplasm#MONDO:0003455	Co-expression	SHROOM3	SLC44A3	YAP1	PTPRF	MAL2	DAB2IP	LRIG3	KIAA1217	EPB41L4B	CTNND1	MLLT4	PLXNB1	MYO5B	DSP	SOX9	PTPN21	MAGI1	SH3D19	DDR1	FAT1	TEAD1	TJP1	ARHGEF16	EPCAM	LGR4	WASL	BCAR1	MYO1B	DDAH1	SOWAHB	SDC1	ADCY6	NCKAP1	TSPAN6	CGN	EPB41L1	VWA1	MYO6	PLEKHA6	AMOTL2	FLRT3	CADPS2	SYT7	MMP15	GNG12	KIAA1522	ST5	RBFOX2	TSPAN12	TOM1L1	RND3	NPNT	CXADR	PTPRK	EFNB2	DOCK1	TEAD3	MID1	ERRFI1	UNC13B	ERBB2	FAM84A	SHROOM2	TOX3	FRAS1	CEP170B	LRP6	ADGRL2	FNBP1L	GRB7	CLDN3	NAV2	SH3BP4	PCDH1	LAMA5	SNX7	ENAH	PTPRU	CPE	EGFR	SEMA3F	EPHA2	TRIM2	FGFR3	KRT19	PARD3B	LAMB1	MYH14	DLG5	CLDN12	WWC1	GAREM1	GNA11	KIF12	RNF128	CBLC	TNFRSF21	ASS1	CMTM4	PARVA
extrahepatic bile duct papillary adenoma#MONDO:0004250	Co-expression	GRB7	ARHGEF16	MAL2	KRT8	CBLC	S100A14	EPCAM	DSP	SDC1	CGN	KRT19	ESRP1	CLDN4	MYO5B	LAD1	CLDN3	PKP3	PRSS8	SLC44A3	SOWAHB	KRT18	RAB25	SHROOM3	EPB41L4B	KIAA1522	FAM83B	PTPRF	RIPK4	ELF3	OVOL2	MISP	ESRP2	B3GNT3	BAIAP2L1	AGR2	CTNND1	ERBB2	CDH1	PRR15	PRR15L	ERBB3	DSG2	TSPAN1	SCNN1A	TMEM125	LAMC2	C1orf210	C1orf106	LRIG3	TOM1L1	FERMT1	FOXA1	YAP1	PERP	KIF12	AP1M2	MST1R	RAB17	KIAA1217	CLDN1	IL22RA1	GPRIN2	EPS8L2	RHPN2	TMPRSS2	EPHA2	WWC1	HSD11B2	GPR39	PLXNB1	CAMSAP3	TEAD3	GRHL2	C11orf52	DDR1	CXADR	IRF6	MMP15	TSPAN6	RBBP8NL	PPL	SEMA3F	FAT1	SH3D19	OVOL1	CDS1	MYO1B	EGFR	LAMA3	GOLT1A	ASS1	PLS1	LAMA5	FGFR3	VWA1	FAM83H	NPNT	LRP5	LGR4	PRSS22
extrahepatic bile duct small cell adenocarcinoma#MONDO:0003708	Co-expression	CBLC	ARHGEF16	SDC1	CLDN3	IL22RA1	S100A14	B3GNT3	GRB7	SLC44A3	LAD1	KRT19	KIF12	MAL2	RIPK4	KIAA1522	RAB25	SOWAHB	EPS8L2	CGN	EPHA2	KRT18	KRT8	GOLT1A	MMP15	TSPAN1	PERP	DSP	ENTPD8	PKP3	PRR15L	FOXA3	MISP	PRR15	CLDN4	CAMSAP3	HSD11B2	ELF3	EFNA1	EPS8L3	SERINC2	IHH	MST1R	CLDN7	FOXA2	RNF128	MUC13	DDR1	GPR39	EPCAM	GPRIN2	CYP2C18	PRSS8	CLDN1	TSPAN8	CRB3	TMEM125	PRSS22	CEP170B	ESRP1	PLXNB1	MYO5B	FAM83H	VWA1	TMEM54	OVOL2	DAB2IP	OVOL1	C1orf210	CEACAM7	EPB41L4B	TFF3	LRP5	PCDH1	FOXA1	TMEM37	GATA6	ACE2	PTPRF	SCNN1A	ARL14	IRF6	SFN	FABP1	WFDC2	KLF5	ERRFI1	S100A16	AP1M2	LAMC2	RAB17	DOK4	TMEM61	LAMA5	FOXQ1	SH3BP4	TMPRSS2	C1orf106	BAIAP2L1	MUC3A	CAPN5
pediatric hepatocellular carcinoma#MONDO:0018055	Co-expression	ANG	CFB	SERPINF2	CCL20	SERPINA4	P4HB	UBD	SAA4	FGA	TM4SF5	FGG	APOC3	SERPINA6	CLDN23	OR2I1P	GRN	AMBP	CCL15-CCL14	FGB	CTSD	SERPINA7	C8A	C8B	FABP1	RP11-903H12.5	ANPEP	RP11-407N17.3	NR1H4	SERPINA11	NR0B2	AADAC	TGFBI	ASL	SERINC2	IL1R1	UGT2A3	BCL3	C3	MBL2	TM4SF4	LAMB3	RAB20	IER3	APOA5	AHSG	SLC25A47	PROC	APOH	IGFBP1	ABCC3	SERPINC1	ICAM1	APCS	MMP14	TMEM37	RRBP1	HMOX1	LIF	GJB2	UGT2B10	PLA2G12B	CXCL1	CLDN1	SLC17A2	CXCL2	LAD1	MOGAT2	PCK2	SLC2A2	SAA1	CTSB	SAA2-SAA4	APOA1	B4GALT1	UGT1A4	CLIC1	DEFB1	TMEM82	GC	AGPAT2	GSTA1	PPIB	IL4R	ZC3H12A	IL22RA1	IL1RN	PLAU	C15orf48	SERPINA1	XXbac-BPG116M5.17	PRODH2	SPSB1	FOXA2	RBP4	TRPV4	XBP1	HGD	FOXA3	AFM	CYP2C18
bile duct carcinoma in situ#MONDO:0000374	Co-expression	SDC1	KLF5	EPHA2	S100A14	KRT18	GATA6	B3GNT3	PERP	RIPK4	SERINC2	LAMB3	CLDN1	CBLC	TSPAN1	LAD1	CFB	RRBP1	KRT8	DSP	GRB7	LAMC2	BAIAP2L1	EPS8L2	IL22RA1	LIF	GPR39	ARHGEF16	CLDN7	ELF3	AGR2	ADGRG6	PKP3	PRR15L	SLC44A3	PRR15	KRT19	P4HB	ARHGEF5	CLDN4	FAM129B	KIAA1522	MUC1	PRSS22	MISP	LRP5	FOXA1	MST1R	ARHGEF34P	CLDN3	EPCAM	RHOD	ERRFI1	CTNND1	ITGB6	EHF	CLDN23	S100A16	MET	MUC13	TACSTD2	CDC42EP5	MMP14	SCNN1A	RAB25	SH2D4A	TSPAN8	FOXQ1	FLNB	ATP8B1	PLEKHG6	ANG	MYOF	DSG2	LAMA3	EXT1	PLEK2	DUOXA2	IGFBP3	SH3BP4	SOWAHB	FAM83B	IRF6	HSPG2	JAG1	CTGF	LRIG3	MYO1B	SDC4	SFN	YAP1	CTNNA1	BDKRB2	MAL2	KRT7	ANXA2	TEAD3	UGT1A6	NECTIN2	EPS8L3	GJB2
intrahepatic bile duct adenosquamous carcinoma#MONDO:0100132	Co-expression	ARHGEF16	GRB7	PKP3	MAL2	S100A14	CLDN4	EPCAM	MISP	KRT18	SDC1	KIAA1522	KRT19	TSPAN1	ESRP1	OVOL2	RIPK4	CLDN3	DSP	LAD1	CBLC	SOWAHB	AGR2	B3GNT3	SLC44A3	TMEM54	RAB25	PERP	DDR1	PRR15	EPB41L4B	TMEM125	PTPRF	CGN	FOXA1	LAMC2	KRT8	EPHA2	AP1M2	MST1R	SFN	RBBP8NL	FAM83B	EPN3	GPR39	FERMT1	ELF3	PRSS22	EPS8L2	MYO5B	ITGB4	SHROOM3	DSG2	SEMA3F	GJB3	WWC1	CDS1	RHOD	S100A16	RHPN2	LAMA5	PRSS8	CAMSAP3	BAIAP2L1	PRR15L	SCNN1A	SOX9	YAP1	CEP170B	CLDN1	KIAA1217	CLDN7	C11orf52	VWA1	TEAD3	FAM83H	LAMA3	ERBB2	DAB2IP	MMP15	TRIM29	ERBB3	TMEM61	IL22RA1	OVOL1	BCAR1	CKMT1A	EGFR	TOM1L1	KCNK1	PLXNB1	CKMT1B	PTPRU	GPRIN2	C1orf106	LRIG3	GOLT1A	SPDEF	ASS1	ITGB6	GRHL3
malignant tumor of extrahepatic bile duct#MONDO:0021321	Co-expression	SLC44A3	MAL2	DAB2IP	PLXNB1	ARHGEF16	DDR1	YAP1	SOWAHB	DSP	EPB41L4B	PTPRF	MMP15	EPCAM	CTNND1	SDC1	SOX9	KIAA1217	VWA1	KIAA1522	MLLT4	LRIG3	WASL	CBLC	MYO5B	KIF12	SHROOM3	CEP170B	SH3D19	SYT7	ERRFI1	RNF128	MYO1B	EPHA2	PCDH1	CLDN3	PLEKHA6	GRB7	FGFR3	SH3BP4	CGN	BCAR1	PTPN21	S100A14	SNX7	CLDN1	AMOTL2	LGR4	NPNT	LRP5	TNFRSF21	GNA11	DOCK1	FAM84A	FLRT3	TOX3	CPE	DDAH1	SEMA3F	PTPRK	APP	CAMSAP3	LAMA5	TSPAN6	TNKS1BP1	TEAD3	SLCO2A1	GNG12	CTGF	EPB41L1	RTKN	LAD1	TEAD1	RARRES2	RND3	TSPAN12	EFNB2	MAGI1	S100A16	ST5	MXRA5	KRT19	ASS1	ADCY6	ANO1	FAT1	CXADR	RBFOX2	NAV2	TMEM125	SHROOM2	ADGRL2	MAOA	ERBB2	NYNRIN	CADPS2	IL22RA1	EFNA1	PERP	RIPK4	C8orf4
liver adenomatosis#MONDO:0035447	Co-expression	TM4SF5	KIF12	AMBP	HMGCS2	SERPINA4	GOLT1A	UGT2A3	NR0B2	DDC	GJB1	SLC39A5	TTR	NR1H4	EPS8L3	FGA	CLDN3	FOXA3	APOC3	MOGAT2	RP11-407N17.3	FABP1	PLA2G12B	ARHGEF16	FOXA2	HNF4A	TMEM82	ENTPD8	GSTA1	CBLC	SLC2A2	TM4SF4	IHH	FGB	HABP2	TOX3	F11	FGG	SOWAHB	SERPINA5	GC	ACE2	CGN	RAB17	EPCAM	GRB7	ALDOB	MUC3A	A1CF	CLRN3	ERBB3	APOB	CAMSAP3	CLDN2	AHSG	TMEM37	MMP15	MYH14	TMPRSS2	APOA1	TSPAN8	UNC93A	RNF128	IL22RA1	GSTA2	MAL2	C2orf72	ELF3	SERPINA6	ABCC6P1	MAT1A	SGK2	TRIM15	CYP2C18	SLC28A1	LAD1	USH1C	HSD11B2	OTC	KRT8	ABCG8	APOA4	SERPINA7	SEMA4G	FGFR4	NAT2	SLC44A3	PRR15L	EFNA1	F10	PRSS8	GPRC5C	HNF1A	F7	SCGN	RBP4	CDH1	TM6SF2	PLA2G2A	SLC17A4	APOH
extrahepatic bile duct clear cell adenocarcinoma#MONDO:0004081	Co-expression	SYT13	TOX3	STMN2	PHYHIPL	CELF3	ST8SIA3	CPLX2	C2orf72	KIF1A	CHGA	RIMBP2	CPE	UNC5D	FAM84A	CTNND2	SHC2	SYT7	LRRTM1	PLPPR1	KIF12	LINGO1	ID4	CHGB	USH1C	EFNB3	SCGN	VANGL2	SST	ACTL6B	SEZ6L2	FAM19A5	CKMT1B	INA	CBLN1	MAGEL2	CXADR	CACNG4	GAP43	ABCC8	CADPS	INSM1	PLEKHA6	HCN4	KCNB2	SEMA5B	SCAMP5	FRZB	PROM1	TCEAL5	TAGLN3	CAMSAP3	PCSK1	TTBK1	TRIM2	MAP6	MSI1	SYT4	SLC8A2	HAPLN4	CFC1	WNK2	SULT4A1	CKMT1A	SLC44A3	TUBB2B	SNAP25	MAL2	FGFR2	SCG2	FLRT3	RAP1GAP	ASIC2	SOWAHA	FGFR3	CAMK2N1	TMEM179	RBP1	CDK5R2	PTPRD	SOX9	DDR1	PRIMA1	PCP4	KCNIP1	ASXL3	PLXNB1	EPCAM	LY6H	CRABP1	EFNA2	DACT2	RAB3C	SALL1	ST6GALNAC5	CCKBR	HPCA	BRINP1	PRR36	EPB41L1	EPB41L4B
ampulla of vater adenosquamous carcinoma#MONDO:0003553	Co-expression	TSPAN1	ITGB4	MAL2	EPB41L4B	S100A14	TRIM29	SOWAHB	MYH14	CKMT1B	MISP	CKMT1A	GJB3	SDR16C5	CEP170B	EPN3	ARHGEF16	PKP3	CAMSAP3	KIAA1522	DDR1	TMEM125	HR	FA2H	PLXNB1	TMEM54	MST1R	AGR2	ALDH3A1	NGEF	CLDN4	SYT7	FXYD3	KCNK1	GRB7	WWC1	EPB41L1	PTPRF	LAMA3	OVOL2	PITPNM3	FAM84A	PLEKHA6	CBLC	FGFR3	SFN	CDS1	VWA1	DAB2IP	EGFR	TMEM61	ATP1B1	B3GNT3	PPL	SYBU	IL20RA	CGN	PCDH1	SPTBN2	KIAA1217	KRT17	KRT19	ATP2C2	SOX9	MYO5B	ELF3	PRSS22	ASS1	GNA11	EHF	BTC	LAMA5	PTPRU	FOXQ1	RHOV	ERBB3	SEMA3F	SLC44A3	ARFGEF3	SPDEF	SDC1	IL22RA1	BCAR1	COBL	RBBP8NL	S100A16	GJB4	ARHGAP39	LY6D	LRP11	SHROOM3	FGFBP1	FUT3	USP43	PSCA	CLDN3	RAPGEFL1	LAD1	EPS8L2	CCNO	SERPINB5
bile duct adenoma#MONDO:0006108	Co-expression	SHROOM3	PTPRF	YAP1	LRIG3	ARHGEF16	SDC1	EPB41L4B	CTNND1	SH3D19	FAT1	KIAA1217	CGN	DSP	TEAD1	MYO1B	KRT8	MAL2	DAB2IP	LGR4	MLLT4	MAGI1	MYO5B	LRP5	TSPAN6	DSG2	TOM1L1	PTPN21	SLC44A3	PLXNB1	GRB7	MMP15	BCAR1	TEAD3	EPHA2	SOX9	ERRFI1	GNG12	TJP1	TSPAN12	CXADR	MID1	DDAH1	AMOTL2	KIAA1522	CLDN12	ADCY6	LRP6	RBFOX2	SEMA3F	RHPN2	LAMA5	RND3	LAMB1	SOWAHB	ERBB2	ASS1	VWA1	CD276	BAIAP2L1	KCTD3	CLDN1	ENAH	RTKN	RAI14	WWC1	ADGRG6	CLDN3	CBLC	WASL	KRT18	EGFR	RHBDF1	NCKAP1	SNX7	DAG1	SH3BP4	TANC1	DOCK1	FERMT1	FGFR3	CARD10	PTPRK	CYR61	NHSL1	TNKS1BP1	RIPK4	FOXA1	PLS3	RAB17	EPCAM	ADGRA3	KRT19	KIF12	NR2F2	TNFRSF21	FRAS1	ST5	FNBP1L	SYT7	EPB41L1
mucinous intrahepatic cholangiocarcinoma#MONDO:0004078	Co-expression	DSP	MAL2	SLC44A3	ARHGEF16	CTNND1	GRB7	KIAA1522	CBLC	CLDN3	SDC1	MYO5B	KRT19	S100A14	YAP1	ERBB2	LAD1	PLXNB1	SHROOM3	KIAA1217	EPHA2	CGN	KRT8	PTPRF	SOWAHB	LRIG3	DAB2IP	EPCAM	ELF3	TSPAN1	DDR1	RIPK4	PRSS8	CLDN4	LAMA5	RAB25	PRR15	SH3D19	ESRP1	AGR2	MLLT4	CLDN1	WFDC2	TEAD3	SH3BP4	PPL	MMP15	EPB41L4B	KRT18	DSG2	MYO1B	TSPAN6	PRR15L	SEMA3F	PCDH1	ANO1	B3GNT3	LAMC2	NPNT	PERP	LRP5	VWA1	TMPRSS2	TMEM125	PKP3	KIF12	SLCO2A1	SOX9	ITGB6	TNFRSF21	SCNN1A	ERRFI1	RBPMS	BAIAP2L1	LAMA3	ERBB3	CEP170B	PTPRK	FOXA1	DOCK1	FAM83B	CD24	IRF6	PRSS22	TNKS1BP1	ACE2	MXRA5	MYH14	CLDN7	BCAM	AMOTL2	EPS8L2	ADCY6	C11orf52	SERINC2	PLEKHA6	PTPN21	WASL	PLEKHA7	LGR4	RND3
ampulla of vater squamous cell carcinoma#MONDO:0003490	Co-expression	CKMT1B	CKMT1A	MYH14	MAL2	FAM84A	EPB41L4B	FA2H	TMEM125	SOWAHB	TSPAN1	CDS1	USH1C	CAMSAP3	SYT7	PLEKHA6	SLC44A3	DDR1	CLDN3	EPCAM	PCDH1	MISP	MUC2	ARHGEF16	ATP2C2	ARFGEF3	AGR2	CGN	ITGB4	WNK2	SOX9	MYO5B	HID1	SOWAHA	NGEF	CAPN9	DAB2IP	CEP170B	SHROOM3	PPP1R1B	COBL	OVOL2	EPB41L1	AGR3	S100A14	RAP1GAP	PTPRF	KIAA1522	TMEM61	CLDN4	GPRIN2	FUT3	IL20RA	WWC1	TSPAN8	CBLC	PRR15L	ERBB3	TMEM54	KCNK1	SYT13	PLEKHH1	B3GNT3	MS4A8	INPP5J	ATP1B1	PLXNB1	MUC4	TOX3	FXYD3	BCO1	WFDC2	VWA1	DMBT1	RAB25	SDR16C5	FGFR3	PRR15	MST1R	NPNT	PCLO	ENTPD8	CEACAM7	ESRP1	EPS8L3	GNA11	CAPN13	ELF3	EPN3	KIF12	PPL	RBBP8NL	PKP3	KIAA1217	MUC13	SLC44A4	SMIM22	GRB7	HSD11B2	CMTM4	MUC3A
extrahepatic bile duct squamous cell carcinoma#MONDO:0006203	Co-expression	MAL2	PTPRF	DAB2IP	EPB41L4B	SLC44A3	EGFR	SOX9	PLXNB1	SHROOM3	CEP170B	SOWAHB	KIAA1217	KIAA1522	ARHGEF16	YAP1	DDR1	SYT7	VWA1	FGFR3	SDC1	DSP	S100A14	EPB41L1	EPHA2	TSPAN1	FAM84A	GNA11	ERBB2	MYH14	BCAR1	AMOTL2	S100A16	PCDH1	PLEKHA6	NGEF	CBLC	PPL	SH3D19	CGN	TMEM54	WWC1	ST5	SEMA3F	LRIG3	MYO5B	LAMA5	GRB7	DDAH1	MAGI1	PTPRU	PTPN21	CTNND1	TSPAN6	TJP1	TEAD1	ATP1B1	FOXQ1	RNF128	ASS1	CAMSAP3	CLDN1	SH3BP4	SCARA3	EPCAM	GNG12	FLRT3	RND3	CLDN4	CLDN3	MMP15	MISP	ITGB4	TNFRSF21	PTPRK	PARVA	MYO1B	CDS1	IL22RA1	RIPK4	PKP3	ARHGAP39	LAMA3	ADCY6	NCKAP1	TMEM125	SNX7	GPR39	WASL	PRR15	CXADR	WFDC2	LRP11	NTN4	LAMC2	EFNB2	ANO1	ERBB3	ERRFI1	SHROOM2	PERP
liver neuroendocrine carcinoma#MONDO:0015072	Co-expression	MAL2	KIF12	SOWAHB	MYH14	EPB41L4B	CBLC	SYT7	ERBB3	SLC44A3	CLDN3	TOX3	MYO5B	TMEM125	CGN	FAM84A	CDH1	RNF128	HMGCS2	TMPRSS2	CAMSAP3	DSP	GJB1	SLCO2A1	PLEKHA6	ARHGEF16	IRF6	EPCAM	NPNT	PRSS8	PCDH1	COBL	GOLT1A	RAB25	VWA1	MUC3A	ACE2	CXADR	C2orf72	MAOA	FGFR2	SEPP1	SHC2	CDS1	LAD1	GRB7	PRR15L	SCGN	CPE	CKMT1B	ESRP1	MLLT4	TTR	USH1C	FGFR3	TSPAN8	C1orf210	GSTA1	KIAA1217	DDC	ANO1	SOWAHA	CADPS2	MOGAT2	GPRIN2	IL20RA	AZGP1	CYP2C18	PLA2G2A	CKMT1A	HSD11B2	HID1	OVOL2	FABP1	C11orf52	WNK2	PTPRF	S100A14	CFTR	SHROOM3	SMOC2	DAB2IP	ARFGEF3	CAPN13	COLCA2	RAB17	PLXNB1	SLC44A4	SHANK2	DACT2	MAGI1	WFDC2	SOX9	EFNA1	SERPINA3	FOXA3	MAOB	RARRES2	SYT13	RAPGEF5	PPL
extrahepatic biliary papillomatosis#MONDO:0004353	Co-expression	KRT8	ARHGEF16	FOXA1	KRT18	GRB7	GOLT1A	CLDN3	ENTPD8	KRT19	SDC1	EPCAM	MISP	IL22RA1	CGN	SOWAHB	PRR15L	FGFR4	CLDN4	PKP3	S100A14	KIF12	ELF3	EPS8L3	B3GNT3	MAL2	EPS8L2	LAD1	CBLC	MMP15	RHPN2	FABP1	BAIAP2L1	FOXA3	KIAA1522	RIPK4	EPB41L4B	TFF1	RAB17	LRP5	PRR15	ERBB2	PLS1	GPR39	AGR2	SLC44A3	DSG2	HNF4G	TM4SF5	TSPAN1	CAMSAP3	HMGCS2	AMBP	ADGRG6	CARD10	OR7E14P	FOXA2	PTPRF	SEMA4G	ESRP2	HSD11B2	C11orf52	ERBB3	EFNA1	ASS1	MYO5B	FAM83H	EPHA2	DSP	NR2F6	TSPAN8	SERINC2	CRB3	PERP	AKR1B10	TMEM54	RNF128	TMEM184A	MST1R	SLC25A10	TMPRSS2	GATA6	C1orf210	FERMT1	AP1M2	MOGAT2	RBBP8NL	GPRC5C	TOM1L1	UGT1A6	MUC13	TEAD3	EFNA2	DDC	LAMA5	RP11-407N17.3	PRSS8	WWC1	CLDN1	RHOD	DNAJC22
adenosquamous bile duct carcinoma#MONDO:0003549	Co-expression	PKP3	S100A14	MISP	B3GNT3	ARHGEF16	GRB7	CLDN4	MST1R	SFN	KRT18	CBLC	RAB25	EPCAM	TSPAN1	CLDN3	LAD1	OVOL2	AGR2	PRSS22	RIPK4	CLDN7	SDC1	PRR15	PRR15L	AP1M2	ELF3	EPS8L2	IL22RA1	ESRP1	FOXA1	GJB3	RBBP8NL	PERP	OVOL1	FAM83H	KLF5	MAL2	SCNN1A	FGFBP1	KIAA1522	FAM83B	KRT19	CRB3	LAMC2	TMEM125	BAIAP2L1	SOWAHB	TMEM61	C19orf33	KRT8	CGN	TMEM54	PRSS8	RHOV	SPDEF	CDC42BPG	PRRG2	C1orf106	C1orf116	EHF	DSG2	ITGB4	LAMB3	EPHA2	SERINC2	TFF1	SP6	C1orf210	GPR39	FERMT1	DSP	SERPINB5	MUC1	TJP3	EPS8L1	ALDH3A1	BICDL2	GPRIN2	TRIM29	ARL14	LSR	EPN3	RHOD	CAMSAP3	CNKSR1	SLC44A3	FXYD3	FA2H	ESRP2	IRF6	PLS1	ITGB6	ENTPD8	DDR1	WFDC2	ATP2C2	HSD11B2	GOLT1A	CHMP4C	SPINT1
extrahepatic bile duct mucinous adenocarcinoma#MONDO:0002739	Co-expression	SDC1	DSG2	LRIG3	YAP1	KRT18	KRT8	ARHGEF16	FERMT1	EPHA2	MYO1B	PERP	SHROOM3	DSP	GNG12	PTPRF	PKP3	TEAD1	SNX7	GRB7	TEAD3	CTNND1	RND3	SLC44A3	BAIAP2L1	TSPAN6	TOM1L1	FAT1	MAL2	RAI14	MID1	PLS3	LAMC2	PAWR	KIAA1217	ADGRG6	RIPK4	HN1L	LRRC1	RHPN2	SH3D19	AJUBA	PPIC	YES1	FAM83B	TSPAN12	CYR61	AMOTL2	GPR39	KRT19	LGR4	MYO5B	EPB41L4B	ESRP1	DAG1	FZD6	SEMA3F	CLDN12	FLNB	TEAD4	ERRFI1	LAMA3	ERBB2	LAMB1	CCND1	KIAA1522	PLS1	MISP	GPX8	CLDN4	ENAH	GFPT1	PTPRK	SH3BP4	UGDH	S100A16	TMEM54	CLDN1	KDELR2	PTPN21	PRKCI	PRR15	LRP11	TJP1	EPCAM	BCAR1	LRP5	NCKAP1	CD276	LIMA1	LAMC1	HSP90B1	S100A14	ECT2	RBFOX2	MET	KITLG	TPBG	FAM57A	RHBDF1	DDAH1
ampulla of vater cancer#MONDO:0000919	Co-expression	MAL2	EPB41L4B	MYO5B	SLC44A3	SHROOM3	MLLT4	WASL	KIAA1217	DSP	SOX9	SOWAHB	CXADR	YAP1	PTPRF	LRIG3	SH3D19	CGN	DAB2IP	FAT1	CTNND1	EPCAM	ARHGEF16	MAGI1	TJP1	MYO6	TOX3	PLEKHA6	FLRT3	FAM84A	PTPRK	NCKAP1	WWC1	PLXNB1	LRP6	DDAH1	NPNT	SYT7	TEAD1	MYO1B	LGR4	DDR1	ERBB3	CBLC	CADPS2	PTPN21	TRIM2	GRB7	TOM1L1	ESRP1	CDS1	ATP1B1	ARFGEF3	TSPAN6	RNF128	LAMA3	GAREM1	ERRFI1	CLDN3	RBFOX2	FNBP1L	EPB41L1	FRAS1	KIF12	EFNB2	MYH14	FGFR3	CKMT1B	SDC1	TNFRSF21	DSG2	CKMT1A	TSPAN12	PCDH1	CLDN12	MID1	TMEM125	DOCK1	SLC1A1	FAM83B	CAMSAP3	VWA1	GPRIN2	GNG12	KRT8	BCAR1	CMTM4	ADGRL2	SHROOM2	AMOTL2	S100A14	KIAA1522	CPE	MAGI3	SHANK2	EGFR	NAV2	RND3	SNX7	LAMB1	DST
carcinoma of liver and intrahepatic biliary tract#MONDO:0018531	Co-expression	ARHGEF16	DSP	CTNND1	PLXNB1	SDC1	PTPRF	YAP1	SLC44A3	MAL2	MMP15	CGN	KIAA1522	CBLC	MLLT4	DAB2IP	EPHA2	GRB7	LRIG3	SH3D19	ERBB2	CLDN3	MYO5B	SHROOM3	KRT8	TEAD3	SOWAHB	TSPAN6	EPB41L4B	KIF12	MYO1B	SH3BP4	LAMA5	FGFR3	VWA1	KIAA1217	DSG2	LGR4	RIPK4	FAT1	LRP5	ERRFI1	EPCAM	ADGRG6	SEMA3F	KRT18	LAD1	DOCK1	KRT19	TNKS1BP1	CLDN1	CXADR	RNF128	RBPMS	TOX3	SEMA4G	MAGI1	PTPN21	CEP170B	SOX9	FOXA3	C1orf226	HSPG2	ERBB3	FOXA1	RTKN	S100A14	NHSL1	HSD11B2	PRSS8	CAMSAP3	RAB17	DDR1	BCAM	FLNB	AMOTL2	TEAD1	ESRP2	ADCY6	FZD5	TNFRSF21	TSPAN12	TOM1L1	TMPRSS2	ANO1	ESRP1	BAIAP2L1	PTPRK	SNX7	LRP6	GATA6	DAG1	SLCO2A1	BCAR1	CTGF	EPHB4	WASL	PCDH1	PRR15	TJP1	JAG1
common bile duct neoplasm#MONDO:0006709	Co-expression	SLC44A3	MAL2	RNF128	DSP	CBLC	SOWAHB	KIF12	ARHGEF16	DAB2IP	EPCAM	PLXNB1	CTNND1	VWA1	YAP1	MMP15	CLDN3	EPB41L4B	SDC1	KIAA1522	SH3D19	PTPRF	TSPAN8	ERRFI1	MYO5B	SLCO2A1	LRIG3	LAD1	S100A14	WASL	DDR1	PCDH1	KIAA1217	C8orf4	ACE2	MLLT4	RARRES2	EPHA2	SOX9	GRB7	MAOA	MXRA5	SH3BP4	CGN	CEP170B	SHROOM3	TOX3	MYO1B	SYT7	IL22RA1	NPNT	CLDN1	SNX7	PLEKHA6	TMEM37	PERP	TSPAN6	DOCK1	CTGF	ANO1	RIPK4	TM6SF2	GJB1	PRR15L	FAM84A	FABP1	GOLT1A	EPS8L3	RAB25	FGFR3	TMEM125	TNFRSF21	JAG1	PRR15	APP	CYP2C18	TSPAN12	GNA11	CAPN5	TSPAN1	GPRIN2	MYH14	GNG12	EFNA1	CPE	HMGCS2	PLA2G2A	KRT19	CFB	PTPRK	FOXA3	TMPRSS2	PTPN21	IRF6	GATA6	SEPP1	LGR4	LRP5	HSD11B2	TEAD3	ERBB3
extrahepatic bile duct carcinoma#MONDO:0003090	Co-expression	DAB2IP	SLC44A3	YAP1	PLXNB1	MAL2	PTPRF	KIAA1217	DDR1	SOX9	LRIG3	EPB41L4B	DSP	SH3D19	CTNND1	SHROOM3	MMP15	PTPN21	ARHGEF16	MYO1B	AMOTL2	SDC1	VWA1	BCAR1	WASL	SH3BP4	ERRFI1	SYT7	EPHA2	SOWAHB	CEP170B	MLLT4	PLEKHA6	DDAH1	KIAA1522	TEAD1	RND3	SNX7	GNG12	PTPRK	ADCY6	CTGF	PCDH1	DOCK1	CPE	MAGI1	EFNB2	GNA11	SEMA3F	ST5	EPB41L1	MYO5B	FLRT3	TEAD3	APP	S100A16	FAT1	NAV2	LGR4	LAMA5	RBFOX2	TSPAN6	TNKS1BP1	FAM84A	EPCAM	ADGRL2	KIF12	TJP1	MXRA5	CYR61	SCARA3	RNF128	NPNT	PARVA	TSPAN12	SHROOM2	CLDN1	NTN4	EGFR	SLCO2A1	TNFRSF21	LRP5	RTKN	LAMB1	CADPS2	ASS1	FGFR3	COL4A2	CBLC	GRB7	COL1A1	NCKAP1	CNN3	ANO1	ERBB2	IGFBP5	CD276	CLDN3	PTPRU	S100A14	LAMB2
adenocarcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018536	Co-expression	MAL2	SOWAHB	TOX3	PLXNB1	CAMSAP3	DDR1	EPCAM	KIF12	CLDN3	ARHGEF16	MLLT4	SLC44A3	CGN	MMP15	DAB2IP	CBLC	MYO5B	PCDH1	VWA1	SYT7	RAB25	EPB41L4B	NPNT	PLEKHA6	TMEM125	KIAA1522	MYH14	SHC2	PTPRF	CTNND1	SEMA4G	DSP	FAM84A	WASL	CD24	LAD1	SOX9	C2orf72	RNF128	PRSS8	CXADR	GRB7	PLEKHA7	SHROOM3	CEP170B	PRR15L	ENTPD8	GOLT1A	CAPN5	S100A14	CDS1	ACE2	ERBB3	WFDC2	NEO1	HSD11B2	EFNA2	PROM1	ESRP1	MUC3A	HID1	FLRT3	KIAA1217	GPRIN2	SDC1	LAMA5	TMPRSS2	LRP5	SLCO2A1	FOXA3	FGFR3	SHROOM2	YAP1	KRT19	IRF6	NYNRIN	C1orf226	EFNA1	MDK	GJB1	CPE	ERBB2	GPC4	CASK	EFNB2	WNK2	TSPAN12	VANGL2	TNFRSF21	CMTM4	LRIG3	PRR15	IHH	ANO1	HMGCS2	RARRES2	DDC	C1orf210	EPS8L3	IGFBP2
signet ring cell intrahepatic cholangiocarcinoma#MONDO:0004346	Co-expression	DSP	ERBB2	MYO5B	CTNND1	SH3D19	LRIG3	KRT8	ARHGEF16	AGR2	SLC44A3	KIAA1217	S100A14	YAP1	MAL2	CLDN4	LAMA3	FAT1	EPCAM	SHROOM3	PTPRF	TSPAN8	EGFR	FLNB	PTPRK	TSPAN1	GRB7	SDC1	MISP	BAIAP2L1	ATP8B1	DSG2	PRR15L	MYH14	KIAA1522	PKP3	ELF3	EPB41L4B	CGN	EPHA2	EPS8L3	FERMT1	PRR15	LAD1	FAM83B	ITGB6	ESRP1	ADGRG6	CDH1	NPNT	TMPRSS2	MUC2	HSPG2	KLF5	CBLC	TJP1	PRSS8	LAMC2	DAB2IP	B3GNT3	MYO1B	PTPN21	TSPAN6	CLDN3	TEAD3	LAMB1	SOWAHB	KRT18	GATA6	CARD10	FOXA1	SLC44A4	ESRP2	DOCK1	MLLT4	TANC1	ADCY6	MET	RIPK4	PARVA	ACE2	PLXNB1	SEMA3F	TEAD1	PPL	SCNN1A	IL22RA1	LGR4	DOCK6	S100A16	LRP5	MAGI1	KRT19	NHSL1	FBLIM1	SLCO2A1	ST5	TACC2	RBPMS	RNF128	ITGA2
squamous cell carcinoma of liver and intrahepatic biliary tract#MONDO:0018534	Co-expression	EPCAM	DLG5	CKAP5	PTPRF	CGN	DSG2	MLLT4	ECT2	WHSC1	FAT1	ZNF664	NUCKS1	IGSF3	RHPN2	ARFGEF3	ACACA	SHROOM3	MEX3A	NET1	MAGI3	MYO5B	ENAH	CENPF	KCTD3	FRAS1	GOLGA2P7	ARHGEF16	CIT	MCM4	PRKDC	ANLN	TICRR	QSER1	PRKCI	TOM1L1	PLS1	CKMT1A	MAGI1	EPB41L4B	NCKAP1	SPTBN2	HNRNPU	TEAD1	ESRP1	CTNND1	FLNB	CAPRIN1	GTF2I	LRP6	FNBP1L	LARP1	YES1	KRT8	CKMT1B	WWC1	IQGAP3	KLHL23	RBFOX2	LRRC1	CLTC	HUWE1	SEZ6L2	PCLO	PLCH1	MAL2	ADNP	XPO1	KIF4A	HSP90AA1	KIAA1522	LYPD6	AGAP1	MID1	CAMSAP3	SUPT16H	MYO6	IPO7	PKP4	PCGF2	CMTM4	CHD4	TOP2A	BAZ1B	HMGB3	TJP1	HN1L	ASPM	PARD3	CXADR	LRIG3	CAND1	DEPDC1	FERMT1	KIAA1549	ARHGAP39	SOX9	KIF11	CBX5	KIF20A	MKI67
liver mesenchymal hamartoma#MONDO:0018308	Co-expression	YAP1	SLC44A3	ERBB2	DSP	KIAA1217	EPHA2	DAB2IP	S100A16	EGFR	ARHGEF16	SH3D19	MAL2	SH3BP4	PTPRF	CTNND1	CTGF	PLXNB1	AMOTL2	LRIG3	VWA1	DOCK1	LAMB2	BCAM	MMP15	KIAA1522	SDC1	SOX9	TEAD3	GRB7	PTPN21	KRT19	LAMA5	PARVA	SEMA3F	PLEKHA6	EPB41L4B	S100A14	ERRFI1	ADCY6	HSPG2	ANO1	MYO1B	NTN4	CLDN1	SLCO2A1	LAD1	DDR1	C8orf4	ST5	TSPAN6	RHBDF1	BCAR1	CYR61	TNFRSF21	CBLC	SHROOM3	CARD10	SNX7	ASS1	TM4SF1	PPL	SOWAHB	MXRA5	GNG12	CEP170B	CLDN3	LRP5	EPCAM	PERP	RNF128	PTPRK	TSPAN1	MYO5B	RARRES2	TEAD1	FAT1	PCDH1	DDAH1	IGFBP3	RND3	EPB41L1	TJP1	C11orf52	RHOD	ADGRG6	GPR39	PPIC	EPS8L2	MYH14	JAG1	EFNA1	COL1A1	NPNT	LGR4	BOK	SCARA3	GPRC5C	TSPAN8	BDKRB2	FKBP9
intrahepatic biliary papillomatosis#MONDO:0004509	Co-expression	ARHGEF16	KRT8	SDC1	GRB7	KRT18	PTPRF	KIAA1522	MMP15	LRP5	SLC44A3	EPHA2	EPCAM	PKP3	MAL2	CLDN3	FOXA1	LAMA5	DSP	EPB41L4B	YAP1	CGN	SOWAHB	MISP	RHPN2	CEP170B	RIPK4	DAB2IP	TEAD3	CLDN4	SHROOM3	TMEM54	BCAR1	DDR1	GPR39	EPS8L2	NR2F6	KRT19	PRR15	PLXNB1	MYO5B	DSG2	SEMA3F	BAIAP2L1	ERBB2	S100A14	SOX9	CAMSAP3	TOM1L1	GNA11	PERP	DAG1	LRIG3	KIF12	CTNND1	TSPAN1	ENTPD8	WWC1	CARD10	RTKN	RHBDF1	ADGRG6	VWA1	CBLC	FERMT1	ERRFI1	TNKS1BP1	SH3D19	AGRN	GOLT1A	GATA6	ASS1	AMOTL2	IL22RA1	PRR15L	FLNB	TEAD1	S100A16	KIAA1217	FAT1	MST1R	LAD1	HSD11B2	FGFR3	SH3BP4	TSPAN6	LGR4	B3GNT3	ADCY6	ARHGAP39	C1orf226	BCAM	EFNA1	C11orf52	AGR2	SNX7	FAM83H	FGFR4	PTPRU	RAB17	RHOD
intrahepatic bile duct adenoma#MONDO:0003444	Co-expression	S100A14	CBLC	LAD1	ARHGEF16	CLDN3	MAL2	ERBB2	DSP	GRB7	SLC44A3	PRR15L	AGR2	ELF3	CLDN4	KRT8	CTNND1	KRT19	SDC1	PRSS8	MYO5B	CGN	KIAA1522	PRR15	RAB25	ESRP1	TMPRSS2	EPCAM	TSPAN8	B3GNT3	NPNT	TSPAN1	SOWAHB	SCNN1A	ESRP2	RIPK4	AGR3	LRIG3	SLC44A4	ERBB3	EPS8L3	DSG2	CLDN7	KRT18	SLCO2A1	PKP3	KIAA1217	PTPRF	LRP5	C1orf210	HSD11B2	IL22RA1	ACE2	PLXNB1	FOXA1	TMEM125	KIF12	FAM83B	MISP	KLF5	ANO1	CDH1	ITGB6	EPHA2	YAP1	MYH14	C11orf52	IRF6	SH3D19	MMP15	RAB17	ENTPD8	SHROOM3	BAIAP2L1	CLDN1	VWA1	EPS8L2	PERP	C1orf106	MST1R	SERINC2	TEAD3	RBBP8NL	EFNA1	OVOL2	HMGCS2	GATA6	PPL	BCAM	EPB41L4B	RNF128	PLEKHA7	HSPG2	DAB2IP	JUP	ADGRG6	C1orf116	GRHL2	LAMC2	MUC13	LAMA5
intrahepatic bile duct cystadenoma#MONDO:0003979	Co-expression	EPS8L3	ENTPD8	CLDN3	KIF12	MUC13	FABP1	TSPAN8	CLDN2	GOLT1A	TM4SF5	TFF1	KRT8	B3GNT3	TSPAN1	SOWAHB	AGR2	ELF3	S100A14	PRR15L	MISP	TM4SF4	GJB1	GPX2	IL22RA1	ARHGEF16	FOXA2	SLC44A3	RNF128	EPS8L2	CLRN3	GPR39	GRB7	EPCAM	SERPINA4	USH1C	MAL2	MYH14	MOGAT2	PLEKHA6	AGR3	NR1H4	CGN	PRR15	HMGCS2	PTPRH	UGT2A3	CFB	SLC39A5	RP11-407N17.3	MUC5B	LAD1	MUC3A	FOXA1	TRIM31	SERPINA3	MUC2	CLDN4	ADH1C	IHH	FOXA3	CBLC	KRT18	SGK2	MYO5B	HNF4A	NR0B2	EPB41L4B	RAB17	UGT1A6	HNF4G	TRIM15	AMBP	HNF1A	SEMA4G	SDC1	AADAC	AKR7A3	AKR1B10	KIAA1522	S100A16	CEP170B	TMPRSS2	CLDN1	HABP2	ERBB3	PLXNB1	CYP2C18	GPRC5C	GATA6	ALDOB	TFF3	NPNT	CDHR2	DSP	VWA1	MST1R	C2orf72	C11orf52	RNF186	ARL14
squamous cell carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018537	Co-expression	FAM84A	CDS1	IL20RA	WFDC2	CKMT1B	TSPAN1	CKMT1A	SLC44A3	CLCA4	FAM183A	AGR3	DDR1	CAPN9	S100A14	C1orf106	LAMC2	SOX9	ZBTB7C	SDR16C5	FUT3	SHROOM3	LRRC10B	MS4A8	PPP1R14C	FXYD3	TMEM54	FGFBP1	EPB41L4B	MAL2	FAM3D	F3	RSPH1	MISP	PRR15	TRIM2	OVOL2	EPB41L1	CEACAM7	SERPINB3	TRIM29	MORN5	DAB2IP	BTC	AQP5	CXADR	SLITRK6	TMEM61	PTPRF	ST5	AGR2	TMEM125	C6orf118	SERTAD4	ALDH3A1	MYH14	PCDH7	MYO5B	TSPAN6	ESRP1	C5orf49	ITGB4	ATP2C2	GJB4	FAM83B	CDH3	FER1L6	CLDN4	CA12	GJB3	BDKRB2	STOML3	VANGL2	MAPK15	EPN3	NOS2	FGFR3	EGFR	KRT19	WWC1	RND3	GNG12	FERMT1	TNFRSF21	KRT6A	DUOXA2	KRT17	SERPINB5	LAMA3	RAB25	ITGB6	ERBB2	ARHGEF16	RASSF10	LRIG3	KIAA1217	EYA2	KIAA1522	MUC2	CBLC	ARFGEF3
ampulla of vater small cell neuroendocrine carcinoma#MONDO:0004117	Co-expression	CGN	ARHGEF16	MAL2	EPCAM	GRB7	CLDN3	CAMSAP3	KRT19	CBLC	MYO5B	DSG2	PLS1	MISP	SOWAHB	CD24	RHPN2	ESRP1	CXADR	SLC44A3	SDC1	C1orf106	TOX3	RAB25	KRT18	OVOL2	WWC1	EPB41L4B	DDR1	KIF12	SHROOM3	KIAA1522	CLDN4	PRR15	GPRIN2	PKP3	PRR15L	FOXA3	MMP15	DSP	PTPRF	S100A14	B3GNT3	PRSS8	RIPK4	GOLT1A	PLXNB1	HSD11B2	HNF4G	TMEM125	FOXA2	FAM83B	KRT8	ELF3	AP1M2	LAD1	ENTPD8	IL22RA1	LRP5	EFNA2	C1orf210	CKMT1B	CKMT1A	SOX9	GPR39	MLLT4	FOXA1	ESRP2	FERMT1	USP43	AGR2	MST1R	FGFR3	RAB17	CDS1	CTNND1	EPS8L3	LRRC1	DAB2IP	ERBB3	TSPAN1	TNFRSF21	IGSF9	BAIAP2L1	LAMA5	FGFR4	EPS8L2	USH1C	PLEKHA7	OR7E14P	SEMA4G	FZD5	TOM1L1	PLEKHA6	DHCR24	CDH1	CRB3	EPHA2	IGSF3	MUC13	RTKN
carcinoma in situ of extrahepatic bile duct#MONDO:0021299	Co-expression	KRT19	EPHA2	S100A14	SDC1	DSP	TSPAN1	LAMC2	ADGRG6	GPR39	KRT18	KRT8	CLDN1	SLC44A3	PERP	ERRFI1	GRB7	S100A16	YAP1	MAL2	RIPK4	KLF5	ITGA2	B3GNT3	PKP3	LAD1	CTNND1	CLDN4	MISP	AGR2	MET	LAMA3	ARHGEF16	MYO1B	ITGB6	GATA6	LAMB3	CBLC	KIAA1522	MYO5B	SH3BP4	EHF	SH3D19	SOWAHB	FLNB	DSG2	KIAA1217	PTPRF	GNG12	BTC	PRSS22	TM4SF1	EPS8L2	TNFRSF21	IL22RA1	NTN4	ELF3	SDC4	FAM83B	CLDN3	LRIG3	RHOD	ITGA3	SHROOM3	BAIAP2L1	SNX7	FOXA1	PRR15	PTPRK	MST1R	RND3	ITGB4	PRR15L	FOXQ1	SOX9	GJB3	GPRC5A	DDR1	WASL	FERMT1	ESRP1	TEAD3	AMOTL2	EFNA1	ATP8B1	CTNNA1	SEPT10	CYR61	SH2D4A	DOCK1	RAB25	CARD10	CTGF	EPS8	SEMA3F	SFN	LAMA5	JAG1	TACSTD2	KITLG	CDH1
distal biliary tract carcinoma#MONDO:0003707	Co-expression	SOWAHB	MLLT4	MAL2	KIF12	SLC44A3	PLXNB1	ARHGEF16	RNF128	EPCAM	ERRFI1	EPB41L4B	CBLC	DAB2IP	VWA1	WASL	CGN	MYO5B	CLDN3	DSP	CTNND1	MMP15	DDR1	SOX9	TOX3	C2orf72	SDC1	SH3D19	KIAA1217	CEP170B	SHROOM3	LAD1	FABP1	GRB7	YAP1	FOXA3	NPNT	SYT7	PTPRF	PLEKHA6	CAMSAP3	CXADR	SEMA4G	GOLT1A	MYO1B	KIAA1522	ERBB3	TMEM37	LRIG3	CLDN1	LRP5	LGR4	MYH14	RARRES2	BCAR1	GJB1	TSPAN12	S100A14	PCDH1	PRR15L	ENTPD8	EPS8L3	RTKN	FLRT3	TSPAN8	ATP1B1	MAOA	PTPN21	HMGCS2	KRT8	PTPRK	FOXA2	EPHA2	TNFRSF21	SEPP1	TMPRSS2	TM6SF2	GNA11	IL22RA1	CDS1	HSD11B2	CLDN2	CFB	HNF4G	IHH	FAT1	TSPAN6	FZD5	CYP2C18	DOCK1	MUC3A	PLEKHA7	PRSS8	SGK2	ACE2	MAGI1	KRT19	ANO1	TNKS1BP1	CD276	USH1C
extrahepatic bile duct adenocarcinoma#MONDO:0002665	Co-expression	DAB2IP	SLC44A3	PLXNB1	YAP1	MAL2	KIAA1217	DDR1	PTPRF	SOX9	SH3D19	EPB41L4B	DSP	CTNND1	LRIG3	PTPN21	SHROOM3	PLEKHA6	SYT7	WASL	VWA1	AMOTL2	SOWAHB	MMP15	SH3BP4	PCDH1	MLLT4	MYO1B	CEP170B	CPE	BCAR1	ARHGEF16	ERRFI1	FAM84A	DDAH1	DOCK1	ST5	PTPRK	CTGF	MXRA5	ADCY6	MAGI1	SDC1	APP	EPHA2	EPB41L1	KIAA1522	RND3	TEAD1	NAV2	FLRT3	EFNB2	MYO5B	SNX7	GNG12	GNA11	SLCO2A1	TJP1	ADGRL2	SEMA3F	S100A16	NTN4	PARVA	KIF12	RNF128	LAMA5	IGFBP5	FAT1	SHROOM2	NPNT	SCARA3	LGR4	CADPS2	TSPAN6	EGFR	RBFOX2	ANO1	TNKS1BP1	TEAD3	EPCAM	C8orf4	COL4A2	CLDN1	TNFRSF21	NCKAP1	CYR61	COL1A1	CBLC	SHC2	LAMB2	FGFR3	LAMB1	RARRES2	TSPAN12	ERBB2	TRIM2	PARD3B	NYNRIN	CNN3	SLC1A1	PLPP3
bile duct cystadenoma#MONDO:0003420	Co-expression	KIF12	SLC44A3	CLDN3	TSPAN8	SOWAHB	RNF128	MAL2	ARHGEF16	EPB41L4B	KRT8	EPS8L3	DSP	TSPAN1	GOLT1A	FOXA2	ERRFI1	GJB1	PLEKHA6	VWA1	CBLC	EGFR	SERPINA3	GRB7	HMGCS2	CLDN2	TM4SF4	ENTPD8	MUC13	PRR15L	IL22RA1	ELF3	AGR2	SHROOM3	FABP1	SOX9	SH3D19	S100A14	KIAA1217	C11orf52	MYH14	TMPRSS2	CFB	SDC1	MYO5B	C8orf4	RAB17	SYT7	S100A16	CLDN1	FOXA1	YAP1	TM4SF5	GPR39	LAD1	GATA6	ERBB3	PTPRF	KIAA1522	CLDN4	KRT19	ADH1C	RP11-407N17.3	PRR15	ERBB2	ASS1	PLXNB1	KRT18	TFF1	CGN	DAB2IP	CTNND1	MUC3A	SERPINA4	GPRC5C	ANO1	NPNT	MISP	TMEM37	BCAR1	USH1C	NR1H4	ATP1B1	HNF4G	MOGAT2	EPS8L2	WASL	CEP170B	BTC	MMP15	LRIG3	PTPN21	AMBP	CARD10	LAMA3	MAOA	PTGR1	B3GNT3	MYO1B	EPCAM	DDAH1
solitary necrotic nodule of the liver#MONDO:0015049	Co-expression	FABP1	CCL15-CCL14	EPS8L3	TM4SF5	CFB	TSPAN8	MOGAT2	TMEM37	UBD	MEP1A	CCL21	UGT2A3	CLRN3	IHH	RNF186	GJB1	TMEM82	ADH1C	C3	SPINK1	SLC39A5	SLC13A2	MUC13	B3GNT3	HMGCS2	GSTA1	OR2I1P	PLA2G2A	TFF3	ACE2	CLDN3	GIPC2	RNASE1	FAM3D	FOXA3	CBLC	NR1H4	FOXA2	IL22RA1	NR0B2	RARRES2	C8orf4	SLC44A4	SERPINF2	CLDN2	GUCA2B	ANG	ELF3	RP11-407N17.3	AGR3	AADAC	KIF12	PLA2G12B	SERPINA1	TRIM15	AMN	CEACAM7	SLCO2B1	SLCO2A1	APOA1	TM4SF4	LAD1	C1QC	RBP4	S100A14	CCL19	LINC00675	TMPRSS2	CLDN7	ALDH1A1	EPS8L2	DUOXA2	DEFB1	GUCA2A	CYP2C18	APOA4	CCL14	CCL15	NR1I2	PTPRH	SGK2	RNF128	C2CD4B	GPX2	RP11-903H12.5	ENTPD8	APOC3	GRB7	TMEM176B	CFI	GPRC5C	USH1C	DUOX2	TMEM176A	PDZD3	CDX1	SEPP1	TRIM31	TSPAN1	ALDOB
mixed fibrolamellar hepatocellular carcinoma#MONDO:0000891	Co-expression	EPHA2	SDC1	YAP1	AJUBA	SEMA3F	PTPRF	TEAD3	CYR61	AMOTL2	DAG1	DAB2IP	MMP15	TEAD2	SERPINH1	SH3BP4	FKBP10	S100A16	NR2F6	BCAR1	LAMA5	LRIG3	EPHB4	TNKS1BP1	LRP5	KRT18	EGFR	ARHGEF16	SIX5	CARD10	PLXNB1	TEAD1	SYDE1	CTGF	PLS3	GNG12	ERRFI1	TSPAN6	RHBDF1	SNX7	BOK	KIAA1522	PERP	SCARA3	TEAD4	ID1	PACSIN3	COL4A6	GPR39	LAMB1	PTPRU	KIRREL	RAI14	RND3	SH3D19	LAMB2	DLG5	RTKN	MID1	MATN3	GPC1	PTPN21	DSP	COL4A5	GPX8	CEP170B	FAM46B	GNA11	MYO1B	B4GALT2	CD276	RIPK4	MFAP2	AGRN	LGR4	DDR1	FAT1	GRB7	RBFOX2	KRT8	CASKIN2	CDR2L	PCGF2	ADCY6	RHOD	CCND1	TSPAN9	CTNND1	DHCR24	TBC1D16	PKP3	PARVA	FLNB	PCSK9	ARHGAP39	DDAH1	CHST3	BCAM	ENAH	ADGRG6	SHB
extrahepatic bile duct adenosquamous carcinoma#MONDO:0006202	Co-expression	CAMSAP3	USH1C	ARHGEF16	EFNA2	IL22RA1	FOXA3	CKMT1B	GPRIN2	C2orf72	MISP	CBLC	CKMT1A	EPS8L3	CLDN3	NGEF	IHH	BAIAP2L2	CGN	FA2H	DOK4	SOWAHB	B3GNT3	MAL2	MMP15	S100A14	EPCAM	ENTPD8	TMEM61	SLC44A3	EPB41L4B	GOLT1A	NR2F6	KIF12	PRR15	SYT13	SOWAHA	SOX9	DDR1	GRB7	TOX3	HSD11B2	TMEM54	ARL14	ZNF488	CEACAM7	MUC13	RNF128	SYT7	DDC	FGFR4	PKP3	FABP1	KRT19	C1orf106	WWC1	CLDN4	SEMA4G	PRSS3	RP11-77K12.7	SDC1	FGFR3	OVOL2	CXADR	RNF186	MST1R	RAB25	KIAA1522	LINC00675	TSPAN8	SDCBP2	TMEM125	INPP5J	EPS8L2	CAMK2N1	CDX1	PTPRH	GUCA2A	DAB2IP	CEP170B	ASS1	SEZ6L2	FOXA2	ABHD17C	GNA11	TMEM198	ENTPD2	C11orf86	NOS2	GUCA2B	KRT8	SFN	PRR15L	CKB	RIPK4	OR7E14P	PTPRF	CLRN3	APOBEC1	EFNA3	GPR39
cholangiolocellular carcinoma#MONDO:0004315	Co-expression	CBLC	CDH1	CGN	GRB7	MAL2	CLDN3	KRT8	LAD1	PRSS8	TMPRSS2	ARHGEF16	DSP	EPCAM	MYO5B	S100A14	ESRP2	ELF3	SOWAHB	SLC44A3	DSG2	SDC1	ESRP1	RAB17	ERBB3	C1orf210	HMGCS2	KRT19	CTNND1	KIF12	IRF6	CYP2C18	FZD5	RAB25	KRT18	ACE2	PRR15L	FOXA3	CD24	GOLT1A	CXADR	RIPK4	SCNN1A	B3GNT3	FAM83B	TSPAN6	KLHDC7A	MLLT4	OCLN	PRR15	GSTA1	CLDN1	C11orf52	EPB41L4B	FABP1	ERBB2	HSD11B2	PTPRF	IL22RA1	BAIAP2L1	RNF128	TMEM37	ADGRG6	C1orf106	SH3D19	LRIG3	SHROOM3	ADH6	KIAA1522	FOXA1	NAT2	ANO1	HNF4G	ENTPD8	TMEM125	YAP1	LGR4	MOGAT2	GSTA2	TSPAN8	GIPC2	PLEKHG6	GRHL2	KIAA1217	UGT1A6	UNC93A	SLCO2A1	GPX2	MYH14	MMP15	LRP5	AGR2	OVOL2	TOM1L1	PLS1	TSPAN12	PLXNB1	MUC3A	TOX3	FOXA2	FGFR3
extrahepatic bile duct signet ring cell carcinoma#MONDO:0002664	Co-expression	KRT8	ARHGEF16	GRB7	S100A14	KRT18	EPCAM	CLDN4	SDC1	PKP3	MISP	BAIAP2L1	CBLC	B3GNT3	LAD1	FOXA1	ELF3	DSP	MAL2	CGN	RIPK4	DSG2	CLDN3	AGR2	PRR15	TSPAN1	ERBB2	IL22RA1	KRT19	ESRP2	MYO5B	PRR15L	FAM83B	ESRP1	SOWAHB	SLC44A3	MST1R	PRSS8	PERP	FERMT1	KIAA1522	OVOL2	SCNN1A	EPB41L4B	C11orf52	GPR39	EPHA2	CLDN1	EPS8L2	SFN	LAMC2	CARD10	AP1M2	RAB17	PTPRF	RAB25	RHPN2	CLDN7	ERBB3	LAMA3	PLS1	C1orf106	ASS1	FAM83H	RBBP8NL	TOM1L1	GOLT1A	ENTPD8	TEAD3	ADGRG6	C1orf210	LRIG3	LRP5	RHOD	SHROOM3	TMPRSS2	SERINC2	TMEM54	GJB3	CHMP4C	KLF5	KIF12	S100A16	HSD11B2	UGT1A6	PRSS22	GATA6	YAP1	ITGB6	SEMA3F	WWC1	SH2D4A	TRIM29	KIAA1217	TSPAN6	EFNA1	TMEM184A	EGFR	CRB3	OVOL1	MYH14
ampulla of vater neoplasm#MONDO:0000921	Co-expression	MAL2	MYO5B	EPB41L4B	SLC44A3	SHROOM3	MLLT4	KIAA1217	DSP	CGN	EPCAM	WASL	SOWAHB	CXADR	LRIG3	CTNND1	ARHGEF16	SH3D19	PTPRF	SOX9	YAP1	FAT1	DAB2IP	CBLC	TOX3	MYO6	MAGI1	NPNT	GRB7	ESRP1	PLEKHA6	ERBB3	TJP1	FAM84A	CLDN3	PLXNB1	LRP6	PTPRK	MYO1B	WWC1	DDR1	LGR4	DSG2	TEAD1	NCKAP1	FLRT3	LAMA3	MYH14	TOM1L1	TSPAN6	DDAH1	SYT7	PTPN21	CDS1	CADPS2	KRT8	SDC1	FAM83B	S100A14	RNF128	TRIM2	ARFGEF3	FNBP1L	TMEM125	TSPAN1	KIF12	TSPAN12	ATP1B1	AGR2	ERRFI1	GAREM1	GPRIN2	TNFRSF21	FRAS1	PCDH1	PRR15L	CAMSAP3	TMPRSS2	KRT19	PRSS8	FGFR3	CKMT1B	EFNB2	LAD1	RBFOX2	KIAA1522	EPB41L1	RAB25	CKMT1A	MID1	CLDN12	CLDN4	OVOL2	VWA1	RHPN2	TSPAN8	DOCK1	MAGI3	HNF4G	ACE2	GNG12
papillary extrahepatic bile duct adenocarcinoma#MONDO:0004039	Co-expression	PLXNB1	DAB2IP	PTPRF	SLC44A3	MMP15	EPB41L4B	ARHGEF16	SOWAHB	SYT7	MAL2	SHROOM3	CTNND1	YAP1	PLEKHA6	DSP	DDR1	KIF12	VWA1	KIAA1217	MLLT4	KIAA1522	SDC1	MYO5B	CEP170B	CGN	SOX9	MAGI1	SEMA4G	FGFR3	PTPN21	SH3D19	TOX3	CAMSAP3	LAMA5	ADCY6	EGFR	CLDN3	LRIG3	LRP5	BCAR1	ERBB2	EPCAM	TEAD3	GRB7	PCDH1	EPB41L1	EPHA2	ST5	SEMA3F	MYO1B	LGR4	RNF128	PTPRU	FAT1	TEAD1	SH3BP4	ASS1	DDAH1	CAPN5	CBLC	TSPAN6	GNA11	RTKN	MYH14	C2orf72	SHROOM2	TNKS1BP1	SHC2	AMOTL2	TJP1	GOLT1A	ERRFI1	FLRT3	C1orf226	TM6SF2	UNC13B	WASL	RBFOX2	BCAM	CADPS2	KRT8	DAG1	PTPRK	TSPAN12	TOM1L1	ADGRL2	NAV2	KRT19	ENTPD8	DOK4	NYNRIN	ERBB3	CPE	FAM84A	DLG5	DOCK1	NCKAP1	NPNT	MUC3A	LAMB2
hilar cholangiocarcinoma#MONDO:0003345	Co-expression	SLC44A3	CTNND1	DSP	YAP1	SH3D19	SDC1	ARHGEF16	KIAA1217	LRIG3	DAB2IP	MAL2	CBLC	MYO1B	EPHA2	ERRFI1	EPB41L4B	PLXNB1	PTPRF	ANO1	SHROOM3	RNF128	KIAA1522	VWA1	LAD1	SOWAHB	PTPN21	MMP15	CLDN1	MYO5B	SH3BP4	GNG12	DOCK1	RND3	S100A14	S100A16	SEMA3F	TSPAN6	GRB7	SNX7	TEAD3	MAOA	SLCO2A1	AMOTL2	TNKS1BP1	ST5	ASS1	TSPAN12	TMEM37	BCAR1	EPCAM	PCDH1	MLLT4	JAG1	CGN	SOX9	CEP170B	MXRA5	WASL	CLDN3	LAMA3	LGR4	KIF12	ERBB2	C8orf4	CTGF	TNFRSF21	CD276	CFB	EGFR	DDR1	RHBDF1	PERP	LRP5	TSPAN1	TSPAN8	FAT1	C11orf52	IL22RA1	TEAD1	LAMB2	TJP1	ADCY6	ACE2	PPIC	LAMC2	PARVA	UNC13B	CYR61	KRT19	MYH14	PLEKHA6	COL1A1	GNA11	RARRES2	BDKRB2	RIPK4	EFNA1	SYT7	COL4A2	LAMB1
bile duct cyst#MONDO:0018805	Co-expression	FABP1	HMGCS2	CBLC	TM4SF5	GSTA1	KIF12	SOWAHB	SERPINA4	CLDN3	GJB1	CYP2C18	MOGAT2	EPS8L3	ADH1C	TMPRSS2	TM4SF4	CFB	TSPAN8	GOLT1A	LAD1	ELF3	UGT2A3	ENTPD8	GPX2	GSTA2	PRR15L	SLC39A5	IHH	NR1H4	CCL15-CCL14	NR0B2	RNF128	RP11-407N17.3	S100A14	MUC13	IL22RA1	HABP2	ALDOB	CLRN3	TMEM82	FOXA2	HNF1A	B3GNT3	CLDN2	HNF4A	APOC3	MAL2	AADAC	RAB17	SLC44A3	AMBP	FGA	FOXA3	SLC2A2	ACE2	ARHGEF16	TSPAN1	PLA2G12B	GRB7	CGN	PRSS8	OTC	GC	UGT1A6	NAT2	AGR2	DSP	C1orf210	ERBB3	TFF3	EPCAM	SGK2	UGT1A4	SLC13A2	KRT8	TMEM37	LRRC31	SERPINA6	RP11-400G3.5	ABCG8	IRF6	A1CF	OR2I1P	RNF186	MYH14	SERPINA3	APOB	C11orf52	GPRC5C	GIPC2	CLDN1	CLDN7	EPS8L2	F11	SLC17A4	AZGP1	MUC3A	CLDN4	SPINK1	APOA4
combined hepatocellular carcinoma and cholangiocarcinoma#MONDO:0044791	Co-expression	SDC1	EPHA2	ARHGEF16	DSP	CTNND1	TEAD3	MMP15	PLXNB1	GRB7	LRP5	LRIG3	PTPRF	MLLT4	KIAA1522	SLC44A3	SH3D19	ADGRG6	CBLC	DAB2IP	ERBB2	DSG2	HSPG2	MYO1B	MAL2	KRT18	EPHB4	FLNB	KRT8	ERRFI1	TNKS1BP1	MYO5B	KIAA1217	SEMA3F	LAMA5	LAD1	FAT1	LGR4	RIPK4	YAP1	SH3BP4	CLDN1	CGN	S100A14	KRT19	EPB41L4B	TSPAN6	CLDN3	VWA1	SOWAHB	PERP	RRBP1	GATA6	CTGF	RBPMS	CYR61	RTKN	TEAD1	LRP6	DAG1	BAIAP2L1	TEAD2	PTPRK	PTPN21	JAG1	AMOTL2	SHROOM3	LAMB1	YES1	ANO1	IL22RA1	EPCAM	CEP170B	DOCK1	FGFR3	RHBDF1	SNX7	TSPAN12	FOXA1	SEMA4G	S100A16	EPS8L2	AJUBA	HSD11B2	RNF128	PKP3	ASS1	DDR1	C1orf226	EFNA1	CARD10	KIF12	SERINC2	COL1A1	CDH1	MAGI1	RARRES2	LAMB2	RAI14	ESRP2	TNFRSF21
sarcomatous intrahepatic cholangiocarcinoma#MONDO:0004451	Co-expression	CBLC	LAD1	S100A14	IL22RA1	B3GNT3	IRF6	HMGCS2	DUOXA2	RAB25	TFF3	CFB	UBD	GSTA1	C1orf116	ACE2	DEFB1	PRSS8	DSP	LCN2	GRB7	FABP1	CYP2C18	CLDN1	MOGAT2	SCNN1A	RIPK4	ST14	PRR15L	SLCO2A1	PLA2G2A	PRSS22	TACSTD2	OR2I1P	GPX2	ELF3	TMPRSS2	CCL15-CCL14	ITGB6	SERPINF2	CEACAM6	CCL21	CEACAM7	TMEM30B	CLDN3	ADH1C	PLEKHG6	SERINC2	C3	COL17A1	UGT2A3	UNC93A	ERBB2	EPCAM	AZGP1	DUOX2	UGT1A6	ARHGEF5	EPS8L2	GSTA2	EHF	EPS8L3	ARHGEF16	GIPC2	CLDN7	MAL2	EFNA1	SLC13A2	FAM3D	SDC1	AGR2	JUP	TSPAN8	SERPINA3	SPINT1	MMP14	LAMB3	CD24	GJB1	TM4SF5	SOWAHB	KLF5	C1orf210	SLC44A3	SLPI	TSPAN1	WFDC2	ESRP1	KIAA1522	OVOL1	AMN	RNF128	AADAC	MPZL2	CLDN4	CDC42BPG	FOXA2	CRB3	ANO1	LAMC2	NR0B2
bile duct mucinous cystic neoplasm with an associated invasive carcinoma#MONDO:0002868	Co-expression	ECT2	DSG2	KRT8	TOP2A	KRT18	EIF4G1	HN1L	TTK	LRP5	BUB1B	CEP55	ARHGEF16	PLS1	KIF20A	MKI67	CDK1	HSPD1	HMGB3	MELK	BAIAP2L1	TPX2	KIF4A	CDC20	IQGAP3	PKP3	CENPF	DEPDC1	ASPM	MST1R	FAM83D	CCNB2	PLK4	SDC1	KIF11	EPCAM	GRB7	CCNB1	PBK	TICRR	MISP	KIFC1	ALDH18A1	BUB1	DLGAP5	FLNB	MCM4	RACGAP1	HMMR	NET1	RRM1	SYNCRIP	KIF2C	HSP90B1	NPM1	JADE3	E2F7	LMNB2	MCM2	HNRNPAB	KRT19	FERMT1	NCAPG	NDC1	TRIP13	CCNA2	SMC4	CDC6	CDCA2	ZWINT	FAM83B	CCT6A	KDM1A	ARHGAP11A	PRC1	RHPN2	PAICS	KIF23	FANCI	CAPRIN1	NCL	CDC25A	TRAF4	PDIA4	MCM3	SSRP1	RAD54L	DTL	CGN	TIMELESS	CSE1L	HSPA9	CDCA5	NEK2	FOXA1	ESPL1	FAM57A	WEE1	GSG2	TEAD4	ACLY
periampullary adenocarcinoma#MONDO:0004465	Co-expression	EPCAM	PLS1	MYO5B	CGN	HNF4G	EPS8L3	MAL2	MUC13	KRT8	GRB7	ARHGEF16	MLLT4	SOWAHB	PRR15L	SLC44A3	RHPN2	MISP	DSG2	EPB41L4B	CBLC	AGR2	C1orf106	GFPT1	SHROOM3	CLDN3	FOXA2	CXADR	DSP	WASL	IL22RA1	ELF3	TOX3	CTNND1	SDC1	FERMT1	SOX9	WWC1	ESRP1	ABCD3	FOXA3	CLDN4	S100A14	LAD1	KIF12	B3GNT3	KRT18	TSPAN1	FAT1	CTNNB1	ERBB3	BAIAP2L1	FOXA1	FLNB	LRRC1	LGR4	PKP3	USH1C	TSPAN8	PTPRF	KIAA1217	GPX2	RIPK4	RP11-407N17.3	CAMSAP3	TMPRSS2	FAM83B	LRIG3	PIK3C2A	RNF128	ARL14	CD2AP	LRP6	ADGRG6	CLDN12	GOLT1A	CLDN1	GPR39	ERRFI1	TOM1L1	GPRIN2	PRR15	YAP1	PLXNB1	CD24	KIF3B	MYO1B	MST1R	LRP5	FZD5	TNFRSF21	SLC12A2	SH3D19	PTPRK	LAMA3	CLDN2	MYO6	HSP90B1	DDC	RAB25	PRSS8
perihilar intrahepatic cholangiocarcinoma#MONDO:0044788	Co-expression	YAP1	PLXNB1	MLLT4	DAB2IP	DSP	SLC44A3	CTNND1	ARHGEF16	LRIG3	MYO5B	SDC1	KIAA1217	LRP5	MAL2	SH3D19	PTPRF	MYO1B	MMP15	EPB41L4B	PTPRK	SHROOM3	ERRFI1	LGR4	GRB7	EPHA2	CGN	SOX9	FAT1	ERBB2	DDR1	TSPAN6	SOWAHB	TEAD1	CLDN1	TEAD3	LRP6	KRT8	TNKS1BP1	PTPN21	KIF12	WASL	KIAA1522	SH3BP4	LAMA5	DAG1	MAGI1	DSG2	AMOTL2	RTKN	TSPAN12	FLNB	CLDN3	ADGRG6	CEP170B	KRT18	CBLC	RIPK4	BCAR1	VWA1	LAMB1	SNX7	TJP1	ADGRL2	SEMA3F	LAD1	TOM1L1	CXADR	DOCK1	DDAH1	ASS1	RND3	CYR61	RBFOX2	ADCY6	PERP	KRT19	DLG5	NPNT	PLEKHA6	YES1	CADPS2	TEAD2	PCDH1	CAMSAP3	RBPMS	RHPN2	NCKAP1	MYO6	CASK	FLRT3	GPR39	NAV2	RNF128	MID1	DHCR24	FRAS1	SEMA4G	SYT7	RAI14	FNBP1L
carcinoma of the ampulla of vater#MONDO:0017590	Co-expression	EPB41L4B	LRIG3	YAP1	SHROOM3	MLLT4	DAB2IP	KIAA1217	FAT1	MAGI1	PTPRF	TEAD1	SH3D19	LRP6	RBFOX2	PTPN21	MAL2	SOX9	WASL	TJP1	MYO5B	NCKAP1	CTNND1	LGR4	SLC44A3	MYO1B	DDAH1	PLXNB1	DSP	MID1	BCAR1	FNBP1L	ENAH	AMOTL2	CXADR	EPB41L1	DDR1	EFNB2	PTPRK	ADGRL2	ARHGEF16	LAMB1	FLRT3	MYO6	GNG12	TSPAN12	SYT7	FRAS1	TOM1L1	KCTD3	CADPS2	ADCY6	TSPAN6	CLDN12	ERRFI1	NAV2	RND3	PLEKHA6	PTPRG	DOCK1	UNC13B	GAREM1	DST	CGN	TRIM2	CPE	TANC1	LIFR	NPNT	ST5	SNX7	SDC1	MMP15	EGFR	SHROOM2	DLG5	DSG2	WWC1	SEMA3F	CDC42BPA	LRP4	LRP11	FAM84A	MAGI3	TNFRSF21	PTK2	TEAD3	VWA1	RAI14	EPCAM	IGSF3	ADGRA3	MPDZ	RTKN	PARD3	PLS3	PARD3B	COL4A5	FGFR3	LAMA3	CYR61
ampulla of vater adenocarcinoma#MONDO:0002670	Co-expression	MLLT4	EPB41L4B	KIAA1217	MAL2	MYO5B	LRIG3	SHROOM3	DAB2IP	YAP1	FAT1	PTPRF	MAGI1	SOX9	SH3D19	LRP6	SLC44A3	TEAD1	PLXNB1	DSP	WASL	CXADR	CTNND1	TJP1	LGR4	PTPN21	RBFOX2	FLRT3	MYO1B	NCKAP1	ARHGEF16	CGN	DDR1	PTPRK	FRAS1	DDAH1	MYO6	NPNT	MID1	EFNB2	ADGRL2	EPB41L1	TOM1L1	PLEKHA6	CADPS2	DSG2	GAREM1	FNBP1L	TSPAN12	SYT7	AMOTL2	ENAH	BCAR1	TSPAN6	NAV2	SOWAHB	EPCAM	WWC1	GRB7	LAMA3	SDC1	LAMB1	DST	FAM84A	ERRFI1	KCTD3	FGFR3	CLDN12	ADCY6	ST5	EGFR	GNG12	TRIM2	RND3	SHROOM2	TNFRSF21	PTPRG	IGSF3	TANC1	TOX3	SEMA3F	DOCK1	VWA1	DLG5	UNC13B	ESRP1	FAM83B	CBLC	LIFR	COL4A5	PARD3	MAGI3	RTKN	MMP15	CAMSAP3	CPE	SNX7	KIAA1522	CKMT1B	LAMA5	PCDH1
cholangiolocellular carcinoma#MONDO:0004315	DisGeNET#Cholangiolocellular Carcinoma	CRNKL1	MTHFR	PROM1	ALB	CRLF1	LIF
pediatric hepatocellular carcinoma#MONDO:0018055	Orphanet_Augmented_2021#Pediatric hepatocellular carcinoma ORPHA:33402	EPHA2	CTGF	S100A16	DST	MYO1B	RAPH1	GPR39	RASAL2	ENAH	SH3BP4	LAMC1	KCTD3	DAB2IP	RND3	TANC1	NCKAP1	ITGAV	LGR4	CTNND1	SDC4	WWTR1	KIRREL	SNX7	BCAR3	ARSJ	DDAH1	SH3D19	CTTNBP2NL	CYR61	ASPH	PTPRF	ERRFI1	SHROOM3	CLDN12	MET	GNG12	ANTXR1	LRP6	EPS8	WASL	FKBP9	NAV2	TJP1	PARVA	TEAD1	DOCK1	CCND1	FAT1	ADAM9	BCAR1	YAP1	COL12A1	AMOTL2	SEMA3F	DAG1	CTNNB1	CD276	TPBG	PLOD2	LAMB2	SMARCA1	PRRG1	MID1	PLS3	TSPAN6	LRP11	PTPRK	LRIG3	PERP	SEPT10	CHST3	EGFR	RHBDF1	SH3PXD2B	ITGA3	SDC1	FRMD6	PTPN21	CAP2	PLK2	GPX8	ITGA2	FERMT2	FLNB	SCARA3	RAI14	ADCY6	FZD6	KDELR3	TWF1	DCBLD2	CRIM1	CTNNA1	PPIC	LAMB1	KITLG	RBFOX2	AJUBA	CAMSAP2	CEP170B	ZNF112	ADGRG6
bile duct adenoma#MONDO:0006108	DisGeNET#Bile duct adenoma	MME	PPARG	BRAF	KRT19	SCGB2A1
periampullary adenocarcinoma#MONDO:0004465	DisGeNET#Periampullary Adenocarcinoma	BCL2	BAG1	MTAP	KRAS	ERBB3	EGFR
extrahepatic bile duct carcinoma#MONDO:0003090	DisGeNET#Carcinoma of extrahepatic bile duct	MUC1	ERCC1	PTGS2	HK2	CDKN1B	MUC2	MGMT	CIB1	MKI67	CCND1	MLH1	F2RL1	MUC4	MSH2	MSLN	MIB1	APC	TP53
pediatric hepatocellular carcinoma#MONDO:0018055	PMC7325970-Table_1.XLSX-Sheet1-Supplementary_Table_1_The_genes_correlated_with_overall_survival_of_liver_cancer_patients_according_to_TCGA_LIHC_dataset	ABCC5	AGTRAP	AHSA1	ATP1B3	B3GAT3	BRK1	BTNL9	CCDC137	CCT3	CCT4	CDC20	CDC42EP2	CDKN2C	CELSR3	CFAP96	CHEK1	CLEC3B	CLTA	COMMD3	DNASE1L3	DTYMK	EIF2B5	EIF2S2	EIF5B	ENTREP3	ERGIC3	GAPDH	GNL2	GPSM2	HCFC1	HILPDA	HM13	ILKAP	KIF2C	KIFC1	KRBA1	LPCAT1	LRRC41	LYSET	MED10	MED19	MIX23	MPV17	MRPL11	MTCH1	MUTYH	NKX3-2	NUP37	PES1	PIGU	POLR2L	PPM1G	PPP1R14B	PTTG1	RAB24	RAB42	RPUSD3	RRP12	RRP8	SAC3D1	SAMD13	SCML2	SEC61G	SLC11A1	SLC16A3	SLC1A5	SLC29A3	SLC41A3	SMS	SOCS2	SRD5A3	STEAP1B	TAF3	TIMM23	TMEM106C	TMEM147	TMEM185B	TRPC4AP	UBE2S	UCK2	UPF3B	UQCRH	XPO5	ZNF576
extrahepatic bile duct neoplasm#MONDO:0021385	RAW_RANKS	CEACAM5	TP53	KRAS	KRT7	GPT	KRT20	ALB	CDX2	LIAT1	SYP	CRP	AFP	MUC5AC	ERBB2	CHGA	SMAD4	SST	MUC6	NCAM1	CDKN2A	EGFR	IDH1	CD274	CDH1	CTNNB1	BRAF	ENO2	KIT	KRT19	PIK3CA	FGFR2	PDPN	CD34	CD8A	CCND1	INS	MME	BCL2	GAST	F2	GPT2	AKT1	MLH1	CD4	GNAS	PCNA	TGFB1	IL6	MSH2	KRT17	PXDN	PXDNL	MYC	PTGS2	TRP53	CD68	MUC4	BRCA2	GCG	MSH6	MTOR	NF1	NRAS	PTEN	ATM	ATP12A	ATP4A	BAX	CCK	CDH2	EPCAM	GPBAR1	HNF1B	PIK3CB	PIK3CD	PIK3CG	PPY	TMEM11	ARID1A	BRCA1	CD163	ESR1	GPC3	IGF2	KRT5	MKI67	PMS2	S100A4	SLC2A1	TNF	CDKN1B	DHX9	F3	MDM2	MET	MMP9	NKX2-1	PDCD1	SLC29A1	VIP
carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018918	RAW_RANKS	KRAS	TP53	ERBB2	IDH1	CEACAM5	FGFR2	GPT	ALB	BRAF	CD274	EGFR	SYP	KRT20	AFP	CRP	KRT7	NCAM1	CDKN2A	CHGA	PIK3CA	AKT1	GNAS	PCNA	PDPN	SMAD4	CD8A	CDX2	CTNNB1	ENO2	MUC5AC	ARID1A	CDH1	GAST	IDH2	KDR	MUC6	NOTCH1	NTRK1	TGFB1	ALK	CCND1	CLDN4	CTLA4	EBAG9	EIF2AK3	FGFR3	GCG	GPC3	IL33	INS	KRT19	LIAT1	MTOR	MYC	NRAS	PTGS2	ROS1	SHH	TGFBR2	TMEM11	TNF	VIP
ampullary signet ring cell adenocarcinoma#MONDO:0002669	RAW_RANKS	MUC5AC	CDX2	KRT20	KRT7	CEACAM5	LIAT1	CDH1	GPT	TP53	CRP	ERBB2	ERBB3	KRT17	KRT18	KRT19	MSH6	MUC6	PIK3C3	PIK3CA	PIK3CB	PIK3CD	PIK3CG	SRC
extrahepatic bile duct cystadenoma#MONDO:0004462	RAW_RANKS	CEACAM5	GPT	AFP	KRT7	GPT2	KRT20	ALB	CDX2	EPCAM	KLK3	KRAS	KRT19	MUC6	NCAM1	NRCAM	TFF2
ampulla of vater mucinous adenocarcinoma#MONDO:0002736	RAW_RANKS	KRT20	KRT7	CDX2	MUC5AC	LIAT1	MSH6	CDKN2A	KRAS	MLH1	MUC6	PXDN	PXDNL	SMAD4	ALB	CANX	CD86	CD9	EEF1A2	EGFR	EPCAM	EZR	GFM1	KLK3	KRT17	KRT19	MSH2	MSN	MTAP	MUC16	PMS2	PTGER4	RDX	REL	SFN	ST6GALNAC1	TP53	TSG101	UTP25
extrahepatic bile duct adenoma#MONDO:0003445	RAW_RANKS	KRT20	TP53	KRT7	LIAT1	GPT	PDPN	CDX2	ALB	CEACAM5	MUC5AC	KRAS	MUC6	CTNNB1	CRP	GPT2	AFP	MLH1	MSH2	MSH6	SST	ATP12A	ATP4A	CDH1	CHGA	EPCAM	ERBB2	F2	HMGA2	KRT19	MME	MUC1	NCAM1	AFAP1	ALCAM	ANO1	APC	AQP1	AQP3	BAX	BCL2	BRAF	CCND1	CD24	CD44	CDH17	CDH2	CDH3	CDKN2A	CISH	CLDN18	CLDN7	DNTT	DSG1	DSG2	EFNB2	EGFR	F3	FN1	FSCN1	GCG	GNAS	GOLPH3	HNF1A	HNF1B	IFNA17	IFNA2	IGF2	INS	KIT	KLK3	KRT14	MSLN	MYC	NRAS	NRCAM	NTRK1	PCNA	PCNT	PMS2	PROM1	PTGS2	RFXANK	S100A4	S100A9	SHKBP1	SLC2A1	SMAD4	SORD	SPP1	SYP	TFF2	THY1	TIMP1	TRP53	TWIST1	WRNIP1
bile duct papillary neoplasm#MONDO:0003455	RAW_RANKS	CEACAM5	TP53	MUC5AC	KRAS	KRT20	MUC6	GPT	KRT7	CDX2	LIAT1	CTNNB1	GNAS	AFP	KRT19	ALB	SMAD4	CDKN2A	CRP	SYP	CCND1	CDH1	INS	EZH2	PXDN	PXDNL	CHGA	GPT2	KIT	PDPN	BRAF	CDH2	ENO2	ERBB2	FGFR2	IDH1	NCAM1	PGR	PIK3CA	RNF43	STK11	TRP53	CD274	CLDN18	EGFR	MDM2	MLH1	MME	MMP7	MUC1	MUC4	SST	AKT1	ARID1A	BANF1	ESR1	F2	GPC3	H2AX	MMP14	MSH6	MYC	PRKACB	PROM1	TGFBR2	ARG1	ATP12A	ATP4A	BRCA1	BRCA2	CCK	CCNA1	CD163	CD2	CD44	CD8A	DNMT1	EBAG9	EPHA3	ERBB3	F3	IGF2	IL6	KITLG	KMT2C	LGALS3	MSH2	PPY	PTGS2	REEP5	S100A9	SLC2A1	TFF1	TNF	TSG101	ZFP354A
extrahepatic bile duct papillary adenoma#MONDO:0004250	RAW_RANKS	KRT20	TP53	KRT7	LIAT1	GPT	PDPN	CDX2	CEACAM5	ALB	MUC5AC	MUC6	CTNNB1	KRAS	CRP	GPT2	MLH1	MSH2	MSH6	AFP	CHGA	EPCAM	ERBB2	F2	HMGA2	KRT19	MME	MUC1	SST	AFAP1	ALCAM	APC	AQP1	AQP3	ATP12A	ATP4A	BAX	BCL2	BRAF	CCND1	CD24	CD44	CDH1	CDH17	CDH3	CISH	CLDN18	CLDN7	DNTT	DSG1	DSG2	EFNB2	EGFR	F3	FN1	FSCN1	GOLPH3	HNF1A	HNF1B	IFNA17	IFNA2	IGF2	INS	KLK3	KRT14	MSLN	MYC	NCAM1	NRAS	NRCAM	NTRK1	PCNA	PCNT	PMS2	PROM1	PTGS2	S100A4	S100A9	SHKBP1	SLC2A1	SORD	SPP1	SYP	TFF2	THY1	TIMP1	TRP53	TWIST1	WRNIP1
extrahepatic bile duct small cell adenocarcinoma#MONDO:0003708	RAW_RANKS	SYP	CHGA	NCAM1	TP53	ALB	CD274	KRAS	KRT7	CDX2	CEACAM5	ENO2	SMAD4	CDH2	CRP	GAST	GPT	KRT20	MUC5AC	PDCD1	CD8A	CDH1	CDKN2A	IDH1	MUC6	PPY	SNAI1	SNAI2	SST	ACTB	AGR2	ANXA5	ARG1	BAP1	CCND1	CCNE1	CD163	CD24	CD24A	CD34	CD44	CDKN1B	EPCAM	ERBB2	ESRRA	EZH2	F2	FABP5	FGFR2	FOXC2	FOXP3	GAPDH	GCG	H1-0	H1F0	H3-3B	H3-4	H3-5	H3-7	H3C12	H3C13	IGF1	INS	KIT	KRT19	LEP	LEPR	LIAT1	LTB	LTBR	MKI67	MPO	MT1E	MTOR	NES	NKX2-1	NRCAM	PPARG	PRL	PSMB8	PTGER4	RELB	RHOA	RHOB	SKP2	SMIM20	STMN1	SUCO	TERT	TRP53	TSPAN3	VANGL1	VIP	WT1
pediatric hepatocellular carcinoma#MONDO:0018055	RAW_RANKS	AFP	GPT	ALB	CTNNB1	INS	F2	TP53	AKT1	CD8A	GPC3	IL6	SERPINA1	MTOR	CD274	GAPDH	TNF	CASP3	ABCB11	CCND1	CD4	FAH	IGF1	TERT	ACTB	ANXA5	BCL2	STAT3	IFNA1	PNPLA3	ABCB4	CRP	G6PC1	GLUL	GPT2	HNF1A	MYC	SRC	TGFB1	CCK	CEACAM5	EPCAM	HGF	IFNG	IL10	KRT19	MET	DNAJB1	HIF1A	IL1B	INS1	MMP9	PIK3CG	BAX	CDH1	EGF	INS2	KRAS	KRT7	OPTN	PIK3CA	PIK3CB	PIK3CD	PXDN	PXDNL	TRP53	BRAF	LEP	PECAM1	PTEN	CASP9	CD44	CTLA4	HNF4A	IGF2	IL2	NFE2L2	ATP8B1	CD34	CXCL8	ELANE	F3	F8	HAMP	HSD17B13	IDO1	KIT	NR1H4	PDCD1	PPARA	SELENOI	ACTBL2	MIX23	C9ORF78	FBXL18	SPNS3	TMCO6	TMEM134	WDR83OS
bile duct carcinoma in situ#MONDO:0000374	RAW_RANKS	TP53	KRAS	KRT7	KRT20	ALB	CEACAM5	ERBB2	FGFR2	LIAT1	AFP	KRT19	CDKN2A	MUC5AC	SMAD4	CDX2	EGFR	CD274	CD8A	IDH1	MUC6	GNAS	GPT	CRP	CTNNB1	IL6	MYC	PCNA	CCND1	DNTT	GPC3	TGFB1	BAX	BCL2	CASP3	CD44	INS	MDM2	MUC4	PTGS2	AKT1	ANXA5	ARG1	BRAF	CDH1	CLDN18	HGF	JUN	MSLN	NTRK1	PIK3CA	PRKACB	SYP	ALK	ARG2	CD86	CDKN1B	EPCAM	ESR1	ESR2	ESRRB	EZH2	FASLG	FOXP3	FSCN1	GPT2	IDH2	IFNG	IL33	INSM1	LGR5	MCL1	MET	MKI67	MME	MUC1	PBRM1	PDPN	PECAM1	PTEN	PTPRC	PXDN	PXDNL	ROS1	SERPINB5	TERT	VSTM2B
intrahepatic bile duct adenosquamous carcinoma#MONDO:0100132	RAW_RANKS	KRT7	KRT19	AFP	CEACAM5	KRT20	KRT5	LIAT1	CCK	CDH1	CRP	CTNNB1	EEF1A2	ENO2	ERBB2	GCNT1	KRT8	MB	MUC5AC	NCAM1	PCNA	PTGS2	SMARCB1	SYP	TP53	TP63
malignant tumor of extrahepatic bile duct#MONDO:0021321	RAW_RANKS	CEACAM5	TP53	KRAS	GPT	KRT7	ALB	KRT20	CDX2	SYP	LIAT1	AFP	CRP	MUC5AC	ERBB2	CHGA	SMAD4	SST	NCAM1	MUC6	CDKN2A	EGFR	IDH1	CD274	CDH1	CTNNB1	BRAF	ENO2	KIT	FGFR2	KRT19	PIK3CA	PDPN	CD34	CD8A	CCND1	MME	GAST	INS	BCL2	F2	GPT2	AKT1	MLH1	CD4	IL6	PCNA	TGFB1	GNAS	MSH2	KRT17	PXDN	PXDNL	MYC	PTGS2	TRP53	CD68	PTEN	BRCA2	CDH2	GCG	MSH6	MTOR	NF1	NRAS	ATM	ATP12A	ATP4A	CCK	GPBAR1	HNF1B	MUC4	PIK3CB	PIK3CD	PIK3CG	PPY	ARID1A	BAX	BRCA1	CD163	EPCAM	ESR1	IGF2	MKI67	PMS2	S100A4	SLC2A1	TMEM11	TNF	CDKN1B	DHX9	F3	GPC3	KRT5	MDM2	MET	NKX2-1	PDCD1	SLC29A1	VIP	ALK
liver adenomatosis#MONDO:0035447	RAW_RANKS	HNF1A	CTNNB1	AFP	INS	GOT2	SHH	TP53	APC	CRP	FABP1	G6PC1	G6PC2	G6PC3	GLUL	ALB	CD34	CD4	CD8A	GCG	GPC3	GPT	KRT7	ALPG	ALPI	ALPL	ALPP	ANO1	APC2	AR	ARID1A	AURKA	AXIN1	B2M	BRAF	CD5	CDKN1B	CEACAM5	CHGA	CYP19A1	DNAJB1	EGF	ERBB2	EZH2	F2	GAPDH	GAST	GLP1R	GPX2	GPX3	GPX5	GPX6	GPX7	GPX8	GSK3B	HAMP	HNF1B	IGF2R	IL6	ITGAM	JUN	KIT	KRAS	KRT19	KRT20	KRT5	MED12	MME	MTOR	MUTYH	MYC	NCAM1	ODC1	PRKACA	PRL	PTPRC	RB1	RPS4X	SELL	SLC2A2	SSTR2	SYP	TERT	UCHL1
extrahepatic bile duct clear cell adenocarcinoma#MONDO:0004081	RAW_RANKS	AFP	NCAM1	ENO2	SYP	TP53	ARG1	CEACAM5	CHGA	GAST	GPC3	KIT	KRT20	KRT7	LIAT1	NRCAM	PAX8	PPY	SALL4	SST
ampulla of vater adenosquamous carcinoma#MONDO:0003553	RAW_RANKS	CEACAM5	GPT	KRT5	KRT7	CCK	GPT2	MUC5AC	SYP
bile duct adenoma#MONDO:0006108	RAW_RANKS	TP53	KRT7	GPT	KRT20	AFP	CEACAM5	KRT19	LIAT1	MUC5AC	MUC6	CTNNB1	CDX2	KRAS	NCAM1	PDPN	AHR	ALB	BRAF	CDKN2A	CYP1A1	MME	CYP1A2	CRP	GPT2	EPCAM	EZH2	BCL2	CYP2B6	IDH1	IGF2	INS	TRP53	CD34	EGFR	ERBB2	MLH1	MSH2	MSH6	PXDN	PXDNL	SMAD4	SORD	SYP	AGRN	ARID1A	ATP12A	ATP4A	CCND1	CD44	CDH17	CHGA	DNAJB1	DSG1	F2	FGFR2	GLUL	GNAS	HMGA2	HNF1B	IDH2	KIT	NRAS	NTRK1	PBRM1	PCNA	POMC	PPHLN1	PROM1	SCGB1A1	SERPINA1	SERPINH1	SFN	SLC2A1	SST	TERT	TFF2	TLCD3B	A4GNT	ABCB1	ABCG2	ACTA1	ACTA2	ACTB	ALCAM	AMY1C	ANO1	APC	AQP1	AQP3	ATP1B1	BANF1	BAX	CALB2	CALM3	CALM4	CALM5	CALML3	CALML4	CALML5	CALML6
mucinous intrahepatic cholangiocarcinoma#MONDO:0004078	RAW_RANKS	MUC5AC	KRT20	CEACAM5	KRT19	KRT7	MUC6	TP53	LIAT1	AFP	CDX2	KRAS	MUC4	CTNNB1	ALB	ERBB2	MUC16	NCAM1	EGFR	BRAF	CDH1	CDH2	GNAS	IL6	PTGS2	SMAD4	EPCAM	GPT	MME	PIK3CA	PXDN	PXDNL	AKT1	CCND1	F2	FGFR2	IDH1	IFNG	KIT	MUC1	ARID1A	CDKN2A	GPC3	MMP7	MMP9	MUC5B	PROM1	TERT	TRP53	CCNL2	CD274	CRP	EZH2	KRT17	KRT8	MLH1	MSH2	MUC13	SATB2	STK11	WT1	ABCC3	ACTB	AQP1	ARG1	CD34	CD8A	CHGA	CLDN18	CLDN7	DNAH8	DNMT1	EGF	EMCN	EPHA3	ERBB3	F3	F7	FABP1	FUT4	HGF	KLK3	LGR5	MDK	MSH6	MUC12	PIK3C3	PIK3CB	PIK3CD	PIK3CG	PKM	PMS2	PTEN	STAT3	TFF1	TGFA	TGFB1	TNF	ZFP354A
ampulla of vater squamous cell carcinoma#MONDO:0003490	RAW_RANKS	SYP	ENO2	KRT7	CEACAM5	KRT20	LIAT1	NCAM1	CCK	CDX2	CHGA	GPT	KRT19	KRT5	MME	MUC5AC	MUC6	NKX2-1
extrahepatic bile duct squamous cell carcinoma#MONDO:0006203	RAW_RANKS	CEACAM5	GPT	SYP	ENO2	NCAM1	CRP	KRT20	KRT5	KRT7	CHGA	LIAT1	MET	AFP	ALB	CCK	CD34	CDH1	CDH2	CDKN2A	CDX2	CREBBP	CSF3	CTCF	FAT1	FBXW7	GPC1	KRAS	KRT19	MAGI2	MME	MUC5AC	MUC6	NOTCH1	RASSF1	S100A4	SERPINB3	SORD	SPA17	SPEF1	TMEM11
liver neuroendocrine carcinoma#MONDO:0015072	RAW_RANKS	SYP	CHGA	NCAM1	SST	CEACAM5	ENO2	AFP	KRT7	TP53	ALB	KRT20	INS	GPT	POMC	GAST	VIP	KRT19	RET	GCG	LIAT1	CD274	NKX2-1	ERBB2	MTOR	CDX2	CTNNB1	KIT	KRAS	GPC3	PTH	SSTR2	CD34	KLK3	PTPRC	EGFR	MME	BRAF	CRP	CTLA4	ATP12A	ATP4A	ESR1	GPT2	KRT8	F2	PPY	ARG1	EPCAM	KRT5	PGR	TG	ALK	AR	CD8A	CDKN2A	ATRX	CDH1	DAXX	GATA3	IGF1	MKI67	PAX8	PTHLH	SERPINA1	CD4	CD99	GRP	IGF2	INSM1	PDCD1	PRL	SSTR5	TNF	UCHL1	WT1	B3GAT1	BRCA1	CCKBR	IL1B	ACE	ASCL1	BRCA2	CRH	EWSR1	NF1	PIK3CA	PIP	PXDN	PXDNL	SALL4	SMAD4	ANO1	ATM	BCL2	CD44	CSF3	CTRB1	CTRB2	CXCR4	DLL3
extrahepatic biliary papillomatosis#MONDO:0004353	RAW_RANKS	CEACAM5	KRAS	TP53	AFP	ALB	EEF1A2	GPT	KRT20	KRT7	LIAT1
adenosquamous bile duct carcinoma#MONDO:0003549	RAW_RANKS	KRT7	AFP	CEACAM5	KRT19	KRT5	TP53	CRP	GPT	GPT2	KRT20	LIAT1	SYP	CDX2	MUC5AC	NCAM1	PTGS2	ATRX	CCK	CD274	CDH1	CHGA	CTNNB1	DAXX	EEF1A2	ENO2	ERBB2	GCNT1	JAK2	KRAS	KRT8	MB	NKX2-1	PCNA	PDCD1	RASSF1	S100A4	SMARCB1	TMEM11	TP63	TYMP	TYMS
extrahepatic bile duct mucinous adenocarcinoma#MONDO:0002739	RAW_RANKS	KRT20	KRT7	CDX2	MUC5AC	LIAT1	CEACAM5	MUC6	CDKN2A	KRAS	KRT19	TP53	GNAS	MSH6	AFP	CANX	CD9	EGFR	EPCAM	EZR	GFM1	GPC3	INS	KLK3	KRT17	MLH1	MME	MSH2	MSN	MTAP	NCAM1	NRCAM	PCNA	PTGER4	PXDN	PXDNL	RDX	SFN	SMAD4	TSG101	UTP25
ampulla of vater cancer#MONDO:0000919	RAW_RANKS	KRT20	KRT7	CEACAM5	CDX2	LIAT1	TP53	SYP	KRAS	ALB	SST	GPT	CHGA	MUC5AC	CRP	ERBB2	SMAD4	PDPN	NCAM1	CDH1	KIT	MME	MUC6	CTNNB1	ENO2	GAST	CDKN2A	BCL2	CD34	EGFR	INS	AFP	CD274	MSH2	BRAF	KRT17	MLH1	MSH6	NF1	PIK3CA	CCND1	GCG	KRT19	BRCA2	EPCAM	PMS2	CD8A	GPT2	HNF1B	PTGS2	CCK	MUC4	PXDN	PXDNL	SLC29A1	TRP53	ATM	BAX	BRCA1	ESR1	IDH1	TTR	VIP	ANO1	ATP12A	ATP4A	CELA1	CELA3B	EGF	ESR2	KRT5	MDM2	MMP2	MUC1	NRAS	PARP1	PCNA	PIK3CB	PIK3CD	PIK3CG	PPY	PTEN	PTGER4	SPP1	ALPP	CD4	CD5	CD79A	CD86	CDKN1B	DNTT	F2	FGFR2	FOXP3	GATA3	GNAS	GPC3	IFNA17	IFNA2	IGF2	LOC102723407
carcinoma of liver and intrahepatic biliary tract#MONDO:0018531	RAW_RANKS	AFP	CEACAM5	KRT7	KRT19	ALB	GPT	TP53	KRT20	F2	GPC3	KRAS	LIAT1	EPCAM	IDH1	CTNNB1	IL6	NCAM1	FGFR2	MUC5AC	CDX2	KIT	CD34	ARG1	CD274	CRP	GPT2	MME	ERBB2	MUC6	CD8A	LRP5	PROM1	SMAD4	TERT	AKT1	CDH1	CDKN2A	MTOR	SYP	TGFB1	BRAF	CD44	EGFR	PBRM1	SALL4	ARID1A	CCND1	CD4	CDH2	EZH2	PCNA	PIK3CA	PTEN	SOX9	ABCB11	ABCB4	IDH2	KRT8	MYC	PDCD1	PXDN	PXDNL	ARG2	BECN1	CCK	CHGA	CTLA4	GNAS	KRT17	MDK	PTGS2	SERPINA1	TRP53	TTR	ABCC2	ABCC3	ACTB	AGR2	AGRN	BMI1	BRCA1	CD68	CLDN4	COMMD3-BMI1	CSF3	DLK1	ENO2	FOLH1	FOXO1	GAPDH	INS	KDR	MDM2	MMP2	MMP7	MMP9	NOTCH2	NR1H4	OPTN	PDPN
common bile duct neoplasm#MONDO:0006709	RAW_RANKS	CEACAM5	TP53	GPT	KRT7	KRAS	KRT20	ALB	AFP	CDX2	SYP	LIAT1	MUC5AC	CRP	CHGA	SST	NCAM1	SMAD4	ERBB2	IDH1	CTNNB1	FGFR2	KRT19	MUC6	CD274	CDKN2A	KIT	PDPN	ENO2	CCND1	EGFR	INS	BRAF	CDH1	BCL2	CD34	F2	IL6	GAST	GPT2	CD8A	MME	PIK3CA	CD4	AKT1	GPC3	MYC	TGFB1	GCG	PCNA	PTGS2	GNAS	KRT17	IDH2	MLH1	MSH2	MTOR	TRP53	CCK	CD68	EPCAM	MSH6	PPY	PTEN	ACTB	CDH2	GAPDH	MDM2	MUC4	TNF	BRCA2	ESR1	FGFR1	HNF1B	PDCD1	PECAM1	PXDN	PXDNL	SLC29A1	ARG1	ATP12A	ATP4A	CTLA4	NF1	NRAS	PMS2	PTPRC	TERT	AHR	BAX	BIRC5	CYP1A1	CYP1A2	GSK3B	IL2	KRT5	KRT8	MUC1	PIK3CB	PIK3CD	PIK3CG
extrahepatic bile duct carcinoma#MONDO:0003090	RAW_RANKS	CEACAM5	TP53	KRT7	KRT20	KRAS	GPT	ALB	CDX2	LIAT1	SYP	AFP	MUC5AC	ERBB2	CRP	CHGA	SMAD4	MUC6	NCAM1	EGFR	IDH1	SST	CDKN2A	BRAF	CD274	CDH1	CTNNB1	FGFR2	PIK3CA	ENO2	KRT19	F2	PDPN	CD8A	CCND1	GAST	AKT1	MME	CD34	BCL2	GNAS	GPT2	INS	KIT	PCNA	MLH1	PXDN	PXDNL	IL6	KRT17	TGFB1	TRP53	MSH2	CD4	MTOR	MUC4	PTEN	CDH2	GPC3	KRT5	MKI67	MYC	NRAS	PTGS2	S100A4	ARID1A	BAX	BRCA2	EPCAM	IGF2	MSH6	PIK3CB	PIK3CD	PIK3CG	TMEM11	TNF	ATP12A	ATP4A	BRCA1	CCK	CD163	CDKN1B	GCG	GPBAR1	MDM2	NF1	NKX2-1	PMS2	PPY	SLC29A1	SLC2A1	VIP	ARG1	ATM	CASP3	CD44	DHX9	F3	HNF1B	MET	MMP9
adenocarcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018536	RAW_RANKS	KRAS	ERBB2	IDH1	TP53	CD274	EGFR	FGFR2	GPT	ALB	BRAF	CEACAM5	SYP	AFP	CRP	GNAS	KRT20	KRT7	CD8A	CDX2	MUC5AC	NCAM1	PIK3CA	AKT1	ARID1A	CDH1	CHGA	ENO2	IDH2	KDR	MUC6	NTRK1	ALK	CDKN2A	CTNNB1	EBAG9	EIF2AK3	FGFR3	GAST	GPC3	INS	KRT19	MME	NOTCH1	NRAS	PDCD1	PDPN	SHH	SMAD4	SST	TGFB1	TGFBR2	AGPS	AGR2	ANXA10	ANXA8	APOB	AREG	ARG1	ATM	ATP12A	ATP4A	AVP	BAP1	BAX	BCL2	C6ORF15	CCK	CCL1	CCL21	CCL25	CCL26	CCND1	CD163	CD24	CD34	CD4	CD44	CD68	CD80	CD86	CDC23	CDH2	CDH3	CLDN4	CSF3	CXCL13	CYP2E1	DHX9	DKKL1	DMBT1	EREG	ERH	ESR1	ESR2	ESRRA	FABP5	FGF2	FGFR1	FLNA	FLT1
signet ring cell intrahepatic cholangiocarcinoma#MONDO:0004346	RAW_RANKS	KRT7	KRT20	CEACAM5	KRT19	AFP	CDX2	LIAT1	ADGRB3	EPHA3	ERBB3	FN1	FUT4	GPC3	GPT	KRT17	MME	MUC5AC	PIK3C2B	STIL	SYNE1	TAF1	TAF1L	TGFBR2	TP53
squamous cell carcinoma of liver and intrahepatic biliary tract#MONDO:0018534	RAW_RANKS	KRT7	CEACAM5	KRT20	ARID1B	BAZ1A	CDH1	CDH2	EEF1A2	ENO2	GCNT1	GPC3	KMT2C	KRT19	MUC5AC	NCAM1	NPM1	PDLIM7	PER3	POLE	SYP	TOPBP1	USP1
liver mesenchymal hamartoma#MONDO:0018308	RAW_RANKS	AFP	CD34	KRT7	PECAM1	CEACAM5	GPT	KRT20	KRT19	SERPINA1	TP53	CTNNB1	DICER1	F2	GPT2	KRT18	KRT8	LIAT1	SLC2A1	CDKN1C	CDX2	ENO2	GPC3	NCAM1	PXDN	PXDNL	SNRPN	ALB	ATP12A	ATP4A	BCL2	CALB2	CCND1	CD44	CD68	CD7	CD99	F3	GNAS	HNF1A	KIT	KRT17	MB	MDM2	MEST	MET	MME	MTOR	MUC5AC	MUC6	MYOG	NAB2	NOTCH2	NPAS4	PEG10	PEG3	PHLDA2	POMC	PTPRC	RPS6KB1	SLCO1B1	SMARCA4	SMARCB1	SOX9	STAT6	SYP	TERT	ZPR1
intrahepatic biliary papillomatosis#MONDO:0004509	RAW_RANKS	CEACAM5	TP53	CDX2	MUC5AC	AFP	KRAS	KRT20	KRT7	MUC6	CTNNB1	KRT19	LIAT1	ALB	CDKN2A	EEF1A2	EGFR	ERBB2	GNAS	GPT	KHK	SLC2A1	SMAD4
intrahepatic bile duct adenoma#MONDO:0003444	RAW_RANKS	TP53	KRT7	AFP	KRT19	CEACAM5	NCAM1	GPT	MUC6	CDKN2A	CTNNB1	MME	MUC5AC	ALB	BRAF	EZH2	KRT20	LIAT1	IDH1	KRAS	ARID1A	BCL2	CD34	CDX2	EPCAM	FGFR2	GLUL	IDH2	IGF2	PBRM1	PPHLN1	SERPINA1	SERPINH1	SFN	SMAD4	TERT	TRP53	AGRN	AHR	AMY1C	AQP1	AQP3	BANF1	CCND1	CD44	CD7	CDH1	CDH17	CDH2	CLDN18	CLDN5	CLDN7	CRP	DNAJB1	DSG1	DSG2	EGFR	ELANE	ENO2	ERBB2	FGF14	FOLH1	GAST	GNAS	HNF1B	HOXA10	HSPA4	HSPB3	INS	INSR	IRS1	KIT	KRT10	KRT36	KRT5	MAD1L1	MAP2K1	MDM2	MKI67	MTAP	NKX2-1	NRAS	NRCAM	NTRK1	PCNT	PRKCSH	PRKDC	PROM1	PXDN	PXDNL	RFXANK	SEC63	SHH	SLC2A1	SORD	STIP1	SYP	TFF2	TGFB1	TP63	TUBB3
intrahepatic bile duct cystadenoma#MONDO:0003979	RAW_RANKS	CEACAM5	AFP	GPT	KRT7	KRT20	MUC5AC	MUC6	ALB	CD44	CDX2	CRP	ENO2	ESR1	FUT4	KRT19	LIAT1	NCAM1	NRCAM	PMPCA
squamous cell carcinoma of gallbladder and extrahepatic biliary tract#MONDO:0018537	RAW_RANKS	CEACAM5	KRT20	KRT5	NCAM1	PDPN	SPA17	SPEF1
ampulla of vater small cell neuroendocrine carcinoma#MONDO:0004117	RAW_RANKS	SYP	CHGA	CEACAM5	ENO2	AFP	CDX2	GAST	KRAS	KRT7	NCAM1	SST	TP53	ALB	ALCAM	ALPP	ARG1	ARID1A	ATRX	BAP1	CCNE1	CD274	CD44	CDH1	DAXX	EPCAM	ERBB2	F2	GCG	GPT	IDH1	INS	KRT20	KRT8	LGALS3	LIAT1	MLH1	MME	MSH2	MSH6	MSLN	PMS2	PROM1	PTGER4	SMAD4	SMARCA2	SMARCA4	SMARCB1	SOX2	SSTR2
carcinoma in situ of extrahepatic bile duct#MONDO:0021299	RAW_RANKS	TP53	KRT20	KRAS	LIAT1	CEACAM5	KRT7	ALB	MUC5AC	SMAD4	ERBB2	MUC6	MYC	AFP	AKT1	BAX	CDX2	CRP	CTNNB1	EGFR	GNAS	MSLN	PIK3CA	PXDN	PXDNL	TGFB1	ADAM10	AREG	ARG1	ARG2	ATF2	BCL2	BRAF	CALB2	CANX	CCND1	CD163	CD274	CD8A	CD9	CDKN2A	CISH	CLDN18	CSF3	DNTT	EFNB2	ENO2	EPCAM	ERBB3	ERBB4	EREG	ESR1	EZH2	FN1	FSCN1	GAPDH	GFM1	GLB1	GPC3	IL4	IL4R	IL4RA	INS	JUN	LGR5	MUC1	MUC4	NOTCH1	NRAS	PDPN	PIK3CB	PIK3CD	PIK3CG	PIK3R1	PLOD1	PTGS2	PTPRC	RPS6	S100A4	SLC29A1	SPP1	SYP	TCHP	TGFBR2	THBD	TIMP1	TMEM11	TP53BP1	TSC2	TSG101	UTP25
distal biliary tract carcinoma#MONDO:0003707	RAW_RANKS	CEACAM5	TP53	ALB	CRP	GPT	IDH1	KRT7	KRAS	SYP	CHGA	ERBB2	SMAD4	CD274	FGFR2	KRT19	CDX2	KRT20	NCAM1	PIK3CA	BRAF	ENO2	LIAT1	SST	AFP	CD4	EGFR	F2	FGFR1	FGFR3	IDH2	PDCD1	ACE	BCL2	CCND1	CD8A	CDH1	CDKN2A	DICER1	ERCC1	FGFR4	FUT4	GAST	IL10	IL6	JUN	MDM2	MET	MLH1	MSH2	MTOR	MUC5AC	MUC6	NF1	NKX2-1	NOTCH3	PDPN	PMS2	PTEN	PTGER4	PXDN	PXDNL
extrahepatic bile duct adenocarcinoma#MONDO:0002665	RAW_RANKS	CEACAM5	TP53	KRT7	KRT20	KRAS	CDX2	GPT	LIAT1	ALB	SYP	AFP	ERBB2	MUC5AC	CRP	CHGA	EGFR	IDH1	SMAD4	MUC6	NCAM1	SST	BRAF	FGFR2	CD274	CDH1	KRT19	CDKN2A	ENO2	CTNNB1	F2	PIK3CA	PDPN	CD8A	GAST	MME	AKT1	TGFB1	BCL2	CCND1	CD34	GNAS	INS	KIT	KRT17	MLH1	PXDN	PXDNL	TRP53	GPT2	IL6	MSH2	BRCA2	CDH2	NRAS	ARID1A	GPC3	MSH6	MTOR	MYC	PCNA	PTEN	TNF	CCK	CD4	DHX9	EPCAM	GPBAR1	MKI67	MUC4	PIK3CB	PIK3CD	PIK3CG	S100A4	BAX	BRCA1	CD163	CDKN1B	F3	GAPDH	HNF1B	IGF2	MDM2	MMP9	MUC1	NF1	NKX2-1	PMS2	SLC29A1	SLC2A1	ARG1	ATM	ATP12A	ATP4A	BIRC5	ESR1	GCG	H3-3B	H3-4	H3-5	H3-7
bile duct cystadenoma#MONDO:0003420	RAW_RANKS	CEACAM5	AFP	GPT	KRT20	KRT7	PGR	ALB	CDX2	ESR1	GPT2	KRT19	MUC5AC	MUC6	CRP	KRAS	CD44	CES1	ENO2	EPCAM	F2	F3	FOXL2	FUT4	HGF	INS	JUN	KLK3	LIAT1	MET	NCAM1	NRCAM	PMPCA	SMAD4	SST	TFF2	TP53
solitary necrotic nodule of the liver#MONDO:0015049	RAW_RANKS	AFP	CD34	CEACAM5	GPT	CD68	CD4	CD8A	KRT19	PECAM1	CTNNB1	ENO2	EZR	GPC3	GPT2	HAMP	HNF1A	IL6	KRT18	KRT20	KRT7	KRT8	LIAT1	NCAM1	POMC	SYP	TRIM21	VIM	WT1
mixed fibrolamellar hepatocellular carcinoma#MONDO:0000891	RAW_RANKS	AFP	ARG1	ALB	BAP1	CTNNB1	DNAJB1	DNER	ERBB2	KRT19	KRT7	NTS	PCSK1	PRKAR2A	PXDN	PXDNL	RASSF1	TERT	TP53
extrahepatic bile duct adenosquamous carcinoma#MONDO:0006202	RAW_RANKS	KRT7	CEACAM5	SYP	AFP	GPT	GPT2	KRT5	NCAM1	ATRX	CCK	CDX2	CHGA	CRP	DAXX	ENO2	KRAS	KRT20	LIAT1	RASSF1	S100A4	TMEM11	TP53
cholangiolocellular carcinoma#MONDO:0004315	RAW_RANKS	KRT19	AFP	KRT7	NCAM1	EPCAM	KIT	CEACAM5	F2	IDH1	TP53	ALB	ARID1A	KRAS	PROM1	CDKN2A	EZH2	GPT	SALL4	TERT	CDH2	FGFR2	IDH2	KRT20	MME	MUC1	PBRM1	SMAD4	ABCB1	ABCC3	ABCG2	AICDA	ARG1	ARID2	BRAF	CD34	CD44	CHST2	CHST4	CLDN4	CLDN7	CRP	CTNNB1	CUL3	EGFR	EMCN	ERBB2	ESRRA	F11R	FABP5	FGB	FN1	FOXA2	GPC3	HNF1A	HS6ST1	IFNL3	IL6	ITGB6	KHK	KITLG	KRT1	KRT8	KRT9	LIAT1	LIF	MAPK3	MARVELD2	MDM2	MLH1	MSH2	MSH6	MYC	NACC1	NES	NIPBL	OCLN	PDPN	PMS2	PPARG	PTEN	PXDN	PXDNL	RUNX2	SYP	TFF1	TNF
extrahepatic bile duct signet ring cell carcinoma#MONDO:0002664	RAW_RANKS	KRT20	KRT7	LIAT1	CDX2	MUC5AC	CEACAM5	AFP	CDH1	CRP	GPC3	GPT	KRT17	KRT19	MET	MSH6	TP53
ampulla of vater neoplasm#MONDO:0000921	RAW_RANKS	KRT20	KRT7	CDX2	CEACAM5	TP53	LIAT1	SYP	KRAS	ALB	SST	CHGA	GPT	MUC5AC	CRP	SMAD4	ERBB2	NCAM1	PDPN	CTNNB1	MUC6	CDH1	ENO2	KIT	BCL2	CDKN2A	GAST	MME	CD274	INS	MLH1	MSH2	MSH6	CD34	EGFR	KRT17	NF1	BRAF	CCND1	GCG	PIK3CA	AFP	PMS2	BRCA2	CD8A	GPT2	HNF1B	KRT19	EPCAM	MUC4	PTGS2	PXDN	PXDNL	SLC29A1	TRP53	VIP	ATM	ATP12A	ATP4A	BAX	BRCA1	CCK	ESR1	ESR2	KRT5	MUC1	NRAS	PCNA	PPY	PTEN	SPP1	TTR	ALPP	ANO1	CD4	CD5	CD79A	CD86	CDKN1B	CELA1	CELA3B	DNTT	F2	GNAS	IDH1	IFNA17	IFNA2	IGF2	LOC102723407	MDM2	MKI67	MMP2	MSLN	PARP1	PIK3CB	PIK3CD	PIK3CG	PTGER4	S100A4	SLC2A1	SOX2
papillary extrahepatic bile duct adenocarcinoma#MONDO:0004039	RAW_RANKS	TP53	MUC5AC	KRAS	KRT20	KRT7	MUC6	GPT	CDX2	CEACAM5	LIAT1	SMAD4	GNAS	SYP	ALB	CDKN2A	PXDN	PXDNL	AFP	CRP	CTNNB1	KRT19	MUC1	NCAM1	PDPN	SST	ARID1A	CCND1	CD8A	CHGA	ENO2	ERBB2	F2	IGF2	MLH1	MME	MUC4	ABCB11	ABCB4	ABCC2	AKT1	ANO1	ARG1	ATP12A	ATP4A	ATP7B	BAX	BDKRB1	BRAF	CANX	CCK	CD163	CD274	CD86	CD9	CDH1	CDKN1B	CLDN18	COX1	CP	CXCL16	DHX9	DNMT1	EBAG9	EGFR	ERBB3	ERBB4	ERCC1	ERH	EZH2	EZR	F3	GFM1	GGT1	GPC3	GPT2	H3-3B	H3-4	H3-5	H3-7	H3C12	H3C13	INS	JAG1	KIT	KRT17	MMP14	MMP2	MMP7	MSH2	MSH6	MSN	MT1E	MT1G	MT1M	MTAP	MYC	NOTCH2	PIK3CA	PIK3R1	PTGER4
hilar cholangiocarcinoma#MONDO:0003345	RAW_RANKS	GPT	CEACAM5	ALB	CRP	F2	TP53	KRT7	AFP	KRAS	GPT2	KRT20	IL6	IDH1	MUC5AC	KRT19	LIAT1	CDH1	ERBB2	MUC6	PXDN	PXDNL	CCND1	CD274	CD34	CD4	CDX2	JUN	MMP2	MMP9	NCAM1	ACE	ATP12A	ATP4A	BRAF	CD8A	EGFR	FGFR2	INS	MMP7	MTOR	SMAD4	TMEM11	ABCB11	BCL2	CHGA	CTNNB1	DHX9	F3	GAPDH	MME	PDCD1	PDPN	SLC10A1	SST	SYP	VEGFC	CACNA1A	CDH2	CYP27A1	GPR17	PIK3CA	SNAI1	TNF	TTR	ACTB	AGR2	BRCA2	CCK	CD79A	CTLA4	ESR1	GPC3	IDH2	LCN2	MBD2	MDM2	MYC	NGF	NR1H4	NRAS	OPTN	PCNA	SERPINC1	AKT1	ALK	ANXA5	BCHE	BCL6	CD68	CDKN2A	CXCL8	CXCR4	DNTT	ENO2	ERCC1	FASLG	FHDC1	GGT1	GGTLC3	GNAS
bile duct cyst#MONDO:0018805	RAW_RANKS	GPT	CEACAM5	CRP	ALB	AFP	PKHD1	F2	TP53	KRAS	GPT2	F3	KRT7	MUC5AC	MUC6	KRT19	KRT20	NCAM1	SST	TGFB1	CDX2	LIAT1	ATP12A	ATP4A	CD34	PRKCSH	PRSS1	SMAD4	CDH1	CES1	CHGA	CTNNB1	IL6	PTGS2	SCT	SPINK1	TTR	AHR	AKT1	CCND1	CD4	CD8A	CDKN2A	CFTR	CYP1A1	CYP1A2	CYP2B6	ESR1	GNAS	GPBAR1	JUN	MME	NOTCH2	NPHP3	PKD1	PKD2	ABCB11	ABCB4	ALK	BCL2	CKB	CKM	CKMT1B	CKMT2	CXCL8	DICER1	EGF	EGFR	ENO2	F8	HDAC9	HNF1B	IFNG	IL33	INS	INVS	JAG1	KIT	MMP2	MMP7	MTOR	MUC4	MYH14	MYOG	NOTCH1	NR1H4	ONECUT1	PCNA	PGR	PLAT	PLG	REG1A	SEC63	SHH	STAT3	SYP	TLR2	TLR7	TNF	TRP53	TBC1D3
combined hepatocellular carcinoma and cholangiocarcinoma#MONDO:0044791	RAW_RANKS	AFP	KRT19	CEACAM5	KRT7	ALB	GPT	EPCAM	TP53	GPC3	F2	KIT	CTNNB1	NCAM1	IDH1	CD274	KRAS	PROM1	ARG1	CD34	KRT20	MME	ARID1A	CD8A	LRP5	TERT	FGFR2	MTOR	LIAT1	IL6	BRAF	CD4	GPT2	IDH2	NES	PBRM1	PDCD1	AKT1	CTLA4	EGFR	ERBB2	MYC	PIK3CA	PTEN	TGFB1	YAP1	EZH2	MET	MKI67	SLCO1B3	SOX9	TRP53	CDH1	CDKN2A	CRP	CSF3	FOLH1	ITK	KRT18	KRT8	PECAM1	PXDN	PXDNL	SYP	THY1	ARG2	ARID2	CCND1	CD44	CLDN4	DLK1	DNAJB1	F3	KDR	KLK3	MMP2	NRAS	PCNA	PDPN	PTPRC	SALL4	SERPINA1	SPP1	TTR	ABCB11	ABCB4	ABCG2	ACR	ADIPOQ	AGR2	AHR	ATM	BCHE	BECN1	BGN	BMI1	CD163	CDH2	CDK6	COMMD3-BMI1	CSF2
sarcomatous intrahepatic cholangiocarcinoma#MONDO:0004451	RAW_RANKS	KRT7	CEACAM5	AFP	KRT19	CD34	GPT	ALB	KIT	KRT20	TP53	ARG1	CD68	F2	GPC3	KRT8	LIAT1	MB	SMARCB1	VIM	ARID1A	ARID2	BAX	BCL2	BCL2L1	CD274	CDH1	CDH2	COX1	CSF3	CTNNB1	CTRB1	CTRB2	CYCS	F3	FASLG	GPT2	KRAS	KRT1	KRT5	MME	NCAM1	PBRM1	PRG3	S100A9	SERPINA1	SOX10	STAT3	STAT6	SYP	TERT	TP63
bile duct mucinous cystic neoplasm with an associated invasive carcinoma#MONDO:0002868	RAW_RANKS	MUC5AC	MUC6	TP53	CDX2	KRAS	KRT20	KRT7	LIAT1	CDKN2A	CTNNB1	EZH2	EZR	FSCN1	GNAS	GPT	MLH1	MSH2	MSH6	MSN	PGR	PIK3CA	RDX	RNF43	SFN	SMAD4	TKFC
periampullary adenocarcinoma#MONDO:0004465	RAW_RANKS	CEACAM5	CDX2	KRT20	KRT7	CRP	SST	KRAS	LIAT1	ALB	GPT	TP53	CDKN2A	CHGA	NF1	SYP	ERBB2	GPT2	INS	MLH1	CCND1	EGFR	KRT17	KRT19	MSH2	MUC5AC	NCAM1	PIK3CA	SMAD4	ATM	BRCA2	CD34	DHX9	ENO2	GAST	PIK3CB	PIK3CD	PIK3CG	AFP	BAX	BRAF	BRCA1	CD274	CD4	CDH1	CDH17	CDKN1B	G6PC1	GAPDH	HIF1A	HNF1B	HNF4A	KIT	MKI67	MMP2	MSH6	MUC4	MUC6	PALB2	PDPK1	PIK3R2	PKM	PTEN	PTGER4	SLC29A1	SPARC	TGFB1	TIMP1	TRP53	ADAM12	ADAM9	ADRA1D	AFAP1	AKT1	AMH	ANO1	ARG2	ATP12A	ATP4A	BAG1	BCL2	BUB1B	BUB3	CASP3	CCND2	CCNE1	CD1D	CD40	CD44	CD68	CD7	CD80	CD86	CD8A	CDH2	CDKN3	CELA1	CELA3B	CKB	CKM	CKMT1B
perihilar intrahepatic cholangiocarcinoma#MONDO:0044788	RAW_RANKS	CEACAM5	ALB	GPT	IDH1	CRP	KRAS	FGFR2	TP53	ERBB2	CD274	F2	EGFR	AFP	IL6	IDH2	SMAD4	BRAF	CDH1	KRT7	MUC5AC	GPT2	MTOR	ARID1A	FGFR1	KRT19	KRT20	NCAM1	PCCA	PXDN	PXDNL	TNF	CDH2	CDKN2A	CTNNB1	DHX9	PDCD1	AKT1	CTLA4	EGF	MSH2	MSH6	MUC6	MYC	NR1H4	OPTN	PIK3CA	CCND1	CD8A	CHGA	EPCAM	EZH2	FGFR3	GGT1	GGTLC3	HIF1A	JUN	KDR	LIAT1	MLH1	MMP7	PBRM1	PMS2	PROM1	S100A4	SERPINC1	SYP	TMEM11	TRP53	ACE	ACTB	AGTR2	ATRX	BCL2	BRCA1	BRCA2	CACNA1A	CAGE1	CCK	CCL21	CD4	CD68	CDX2	CXCL8	CYP27A1	DHH	EZR	FGF19	FUT4	GNAS	HMGA2	IFNG	IL15	IL16	IL1B	KLRK1	LCN2	MAPK3	MDM2	MMP14	MUC1
carcinoma of the ampulla of vater#MONDO:0017590	RAW_RANKS	KRT20	KRT7	CDX2	CEACAM5	LIAT1	TP53	KRAS	SYP	GPT	CHGA	MUC5AC	SST	ALB	ERBB2	SMAD4	CRP	NCAM1	CDH1	MUC6	CTNNB1	ENO2	PDPN	KRT17	MME	EGFR	KIT	MSH2	AFP	CDKN2A	MLH1	MSH6	PIK3CA	BRAF	CD34	INS	CD274	EPCAM	GAST	KRT19	NF1	PMS2	BCL2	BRCA2	CCND1	GPT2	PXDN	PXDNL	SLC29A1	TRP53	GCG	HNF1B	KRT5	MUC4	PIK3CB	PIK3CD	PIK3CG	ATM	BAX	CCK	MUC1	NRAS	PCNA	PTEN	PTGER4	SPP1	ALPP	BRCA1	CD86	CD8A	CDKN1B	CELA1	CELA3B	GATA3	GPC3	IFNA17	IFNA2	IGF2	MDM2	MKI67	MSLN	NKX2-1	PARP1	PTGS2	S100A4	SLC2A1	SOX2	TFF2	TIMP1	TNF	VIP	AKT1	ALDH18A1	ALPG	ALPI	ALPL	ANO1	ARG1	ARID1A	ATP12A	ATP4A
ampulla of vater adenocarcinoma#MONDO:0002670	RAW_RANKS	KRT20	KRT7	CDX2	LIAT1	CEACAM5	SYP	TP53	KRAS	CHGA	GPT	SST	MUC5AC	ALB	ERBB2	NCAM1	SMAD4	CRP	EGFR	ENO2	MUC6	KIT	PDPN	CTNNB1	KRT17	MSH2	CDKN2A	MLH1	MME	AFP	BRAF	CD274	CD34	CDH1	MSH6	GAST	NF1	PIK3CA	BCL2	BRCA2	EPCAM	HNF1B	PXDN	PXDNL	TRP53	GPT2	INS	KRT19	KRT5	PMS2	SLC29A1	ANO1	CCK	CCND1	GCG	MUC1	MUC4	PTGER4	ATM	BAX	BRCA1	CD86	F3	GPC3	IGF2	MDM2	MMP2	MSLN	NRAS	NTRK1	PIK3CB	PIK3CD	PIK3CG	PTEN	PTGS2	SOX2	SPP1	AKT1	ARG1	BIRC5	CD79A	CD80	CD8A	CDH17	CDKN1B	DHX9	DNTT	EGF	F2	F8	FSCN1	G6PC1	GNAS	GPC1	HMGA2	HNF4A	IDH1	IGF1	KLK3	KRT8	MET